several changes for local models
This commit is contained in:
Florian Förster
parent
0183b628bd
commit
42e2185f62
@ -1,128 +0,0 @@
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<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
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<vizmap id="VizMap-2024_07_12-08_08" documentVersion="3.1">
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||||||
<visualStyle name="lang_main">
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||||||
<network>
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||||||
<visualProperty default="0.0" name="NETWORK_CENTER_X_LOCATION"/>
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||||||
<visualProperty default="0.0" name="NETWORK_CENTER_Y_LOCATION"/>
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||||||
<visualProperty default="0.0" name="NETWORK_CENTER_Z_LOCATION"/>
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||||||
<visualProperty default="false" name="NETWORK_ANNOTATION_SELECTION"/>
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||||||
<visualProperty default="1.0" name="NETWORK_SCALE_FACTOR"/>
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||||||
<visualProperty default="false" name="NETWORK_NODE_LABEL_SELECTION"/>
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||||||
<visualProperty default="400.0" name="NETWORK_HEIGHT"/>
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||||||
<visualProperty default="true" name="NETWORK_NODE_SELECTION"/>
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||||||
<visualProperty default="550.0" name="NETWORK_WIDTH"/>
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||||||
<visualProperty default="0.0" name="NETWORK_DEPTH"/>
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||||||
<visualProperty default="false" name="NETWORK_FORCE_HIGH_DETAIL"/>
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||||||
<visualProperty default="" name="NETWORK_TITLE"/>
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||||||
<visualProperty default="true" name="NETWORK_EDGE_SELECTION"/>
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||||||
<visualProperty default="#F7FFFF" name="NETWORK_BACKGROUND_PAINT"/>
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||||||
</network>
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||||||
<node>
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||||||
<dependency value="true" name="nodeCustomGraphicsSizeSync"/>
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||||||
<dependency value="true" name="nodeSizeLocked"/>
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||||||
<visualProperty default="ROUND_RECTANGLE" name="NODE_LABEL_BACKGROUND_SHAPE"/>
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||||||
<visualProperty default="org.cytoscape.cg.model.NullCustomGraphics,0,[ Remove Graphics ]," name="NODE_CUSTOMGRAPHICS_9"/>
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||||||
<visualProperty default="C,C,c,0.00,0.00" name="NODE_CUSTOMGRAPHICS_POSITION_7"/>
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||||||
<visualProperty default="true" name="NODE_NESTED_NETWORK_IMAGE_VISIBLE"/>
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||||||
<visualProperty default="0.0" name="NODE_LABEL_ROTATION"/>
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||||||
<visualProperty default="175" name="NODE_LABEL_BACKGROUND_TRANSPARENCY"/>
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||||||
<visualProperty default="0.0" name="NODE_CUSTOMGRAPHICS_SIZE_8"/>
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||||||
<visualProperty default="C,C,c,0.00,0.00" name="NODE_CUSTOMGRAPHICS_POSITION_2"/>
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||||||
<visualProperty default="org.cytoscape.cg.model.NullCustomGraphics,0,[ Remove Graphics ]," name="NODE_CUSTOMGRAPHICS_6"/>
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||||||
<visualProperty default="org.cytoscape.cg.model.NullCustomGraphics,0,[ Remove Graphics ]," name="NODE_CUSTOMGRAPHICS_7"/>
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||||||
<visualProperty default="org.cytoscape.cg.model.NullCustomGraphics,0,[ Remove Graphics ]," name="NODE_CUSTOMGRAPHICS_1"/>
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||||||
<visualProperty default="org.cytoscape.cg.model.NullCustomGraphics,0,[ Remove Graphics ]," name="NODE_CUSTOMGRAPHICS_4"/>
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<visualProperty default="0.0" name="NODE_CUSTOMGRAPHICS_SIZE_9"/>
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||||||
<visualProperty default="ROUND_RECTANGLE" name="COMPOUND_NODE_SHAPE"/>
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||||||
<visualProperty default="0.0" name="NODE_CUSTOMGRAPHICS_SIZE_5"/>
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||||||
<visualProperty default="C,C,c,0.00,0.00" name="NODE_CUSTOMGRAPHICS_POSITION_9"/>
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<visualProperty default="C,C,c,0.00,0.00" name="NODE_CUSTOMGRAPHICS_POSITION_5"/>
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<visualProperty default="10.0" name="COMPOUND_NODE_PADDING"/>
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||||||
<visualProperty default="0.0" name="NODE_CUSTOMGRAPHICS_SIZE_3"/>
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||||||
<visualProperty default="0.0" name="NODE_CUSTOMGRAPHICS_SIZE_6"/>
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||||||
<visualProperty default="C,C,c,0.00,0.00" name="NODE_CUSTOMGRAPHICS_POSITION_8"/>
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||||||
<visualProperty default="SE,NW,c,-2.00,3.00" name="NODE_LABEL_POSITION"/>
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||||||
<visualProperty default="ELLIPSE" name="NODE_SHAPE"/>
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||||||
<visualProperty default="C,C,c,0.00,0.00" name="NODE_CUSTOMGRAPHICS_POSITION_3"/>
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<visualProperty default="0.0" name="NODE_CUSTOMGRAPHICS_SIZE_4"/>
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<visualProperty default="SansSerif.plain,plain,12" name="NODE_LABEL_FONT_FACE"/>
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||||||
<visualProperty default="#D1F5BE" name="NODE_BORDER_PAINT"/>
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<visualProperty default="40.0" name="NODE_HEIGHT"/>
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<visualProperty default="255" name="NODE_LABEL_TRANSPARENCY"/>
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<visualProperty default="#E1E1E1" name="NODE_LABEL_BACKGROUND_COLOR"/>
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<visualProperty default="C,C,c,0.00,0.00" name="NODE_CUSTOMGRAPHICS_POSITION_6"/>
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<visualProperty default="false" name="NODE_SELECTED"/>
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||||||
<visualProperty default="0.0" name="NODE_DEPTH"/>
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||||||
<visualProperty default="SOLID" name="NODE_BORDER_STROKE"/>
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||||||
<visualProperty default="" name="NODE_TOOLTIP"/>
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||||||
<visualProperty default="7.0" name="NODE_BORDER_WIDTH"/>
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||||||
<visualProperty default="0.0" name="NODE_CUSTOMGRAPHICS_SIZE_2"/>
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||||||
<visualProperty default="#A63C06" name="NODE_LABEL_COLOR"/>
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<visualProperty default="0.0" name="NODE_X_LOCATION"/>
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||||||
<visualProperty default="18.0" name="NODE_SIZE"/>
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||||||
<visualProperty default="org.cytoscape.cg.model.NullCustomGraphics,0,[ Remove Graphics ]," name="NODE_CUSTOMGRAPHICS_8"/>
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<visualProperty default="0.0" name="NODE_Z_LOCATION"/>
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<visualProperty default="#FE9929" name="NODE_FILL_COLOR"/>
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<visualProperty default="0.0" name="NODE_CUSTOMGRAPHICS_SIZE_1"/>
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<visualProperty default="255" name="NODE_BORDER_TRANSPARENCY"/>
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<visualProperty default="C,C,c,0.00,0.00" name="NODE_CUSTOMGRAPHICS_POSITION_1"/>
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<visualProperty default="org.cytoscape.cg.model.NullCustomGraphics,0,[ Remove Graphics ]," name="NODE_CUSTOMGRAPHICS_2"/>
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<visualProperty default="org.cytoscape.cg.model.NullCustomGraphics,0,[ Remove Graphics ]," name="NODE_CUSTOMGRAPHICS_3"/>
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<visualProperty default="60.0" name="NODE_WIDTH"/>
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<visualProperty default="" name="NODE_LABEL">
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<passthroughMapping attributeName="name" attributeType="string"/>
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</visualProperty>
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<visualProperty default="org.cytoscape.cg.model.NullCustomGraphics,0,[ Remove Graphics ]," name="NODE_CUSTOMGRAPHICS_5"/>
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<visualProperty default="500.0" name="NODE_LABEL_WIDTH"/>
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<visualProperty default="C,C,c,0.00,0.00" name="NODE_CUSTOMGRAPHICS_POSITION_4"/>
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<visualProperty default="0.0" name="NODE_CUSTOMGRAPHICS_SIZE_7"/>
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<visualProperty default="#FFFF00" name="NODE_SELECTED_PAINT"/>
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<visualProperty default="0.0" name="NODE_Y_LOCATION"/>
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<visualProperty default="true" name="NODE_VISIBLE"/>
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<visualProperty default="255" name="NODE_TRANSPARENCY"/>
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<visualProperty default="14" name="NODE_LABEL_FONT_SIZE"/>
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</node>
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<edge>
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<dependency value="true" name="arrowColorMatchesEdge"/>
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<visualProperty default="false" name="EDGE_SELECTED"/>
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<visualProperty default="255" name="EDGE_TRANSPARENCY"/>
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<visualProperty default="10" name="EDGE_LABEL_FONT_SIZE"/>
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<visualProperty default="#577399" name="EDGE_UNSELECTED_PAINT"/>
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<visualProperty default="" name="EDGE_LABEL"/>
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<visualProperty default="#FFFFFF" name="EDGE_STROKE_UNSELECTED_PAINT"/>
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<visualProperty default="200.0" name="EDGE_LABEL_WIDTH"/>
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<visualProperty default="#000000" name="EDGE_LABEL_COLOR"/>
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<visualProperty default="SansSerif.plain,plain,10" name="EDGE_LABEL_FONT_FACE"/>
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<visualProperty default="0.728545744495502,-0.684997151948455,0.6456513365424503" name="EDGE_BEND"/>
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<visualProperty default="#B6B6B6" name="EDGE_LABEL_BACKGROUND_COLOR"/>
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<visualProperty default="AUTO_BEND" name="EDGE_STACKING"/>
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<visualProperty default="#000000" name="EDGE_TARGET_ARROW_UNSELECTED_PAINT"/>
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<visualProperty default="0.5" name="EDGE_STACKING_DENSITY"/>
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<visualProperty default="NONE" name="EDGE_TARGET_ARROW_SHAPE"/>
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<visualProperty default="true" name="EDGE_VISIBLE"/>
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<visualProperty default="C,C,c,0.00,0.00" name="EDGE_LABEL_POSITION"/>
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<visualProperty default="0.0" name="EDGE_LABEL_ROTATION"/>
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<visualProperty default="" name="EDGE_TOOLTIP"/>
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<visualProperty default="0.0" name="EDGE_Z_ORDER"/>
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<visualProperty default="#FFFF00" name="EDGE_TARGET_ARROW_SELECTED_PAINT"/>
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<visualProperty default="#FF0000" name="EDGE_STROKE_SELECTED_PAINT"/>
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<visualProperty default="NONE" name="EDGE_SOURCE_ARROW_SHAPE"/>
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<visualProperty default="#FFFF00" name="EDGE_SOURCE_ARROW_SELECTED_PAINT"/>
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<visualProperty default="false" name="EDGE_LABEL_AUTOROTATE"/>
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<visualProperty default="true" name="EDGE_CURVED"/>
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<visualProperty default="#000000" name="EDGE_SOURCE_ARROW_UNSELECTED_PAINT"/>
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<visualProperty default="255" name="EDGE_LABEL_TRANSPARENCY"/>
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<visualProperty default="6.0" name="EDGE_TARGET_ARROW_SIZE"/>
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<visualProperty default="NONE" name="EDGE_LABEL_BACKGROUND_SHAPE"/>
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<visualProperty default="255" name="EDGE_LABEL_BACKGROUND_TRANSPARENCY"/>
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<visualProperty default="SOLID" name="EDGE_LINE_TYPE"/>
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<visualProperty default="6.0" name="EDGE_SOURCE_ARROW_SIZE"/>
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<visualProperty default="3.0" name="EDGE_WIDTH">
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<continuousMapping attributeName="weight" attributeType="float">
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<continuousMappingPoint attrValue="0.09520000219345093" equalValue="2.0" greaterValue="2.0" lesserValue="1.0"/>
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<continuousMappingPoint attrValue="1.0" equalValue="10.0" greaterValue="1.0" lesserValue="10.0"/>
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</continuousMapping>
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</visualProperty>
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</edge>
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</visualStyle>
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</vizmap>
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@ -1,123 +0,0 @@
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<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
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<vizmap id="VizMap-2024_07_10-16_50" documentVersion="3.1">
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<visualStyle name="template">
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<network>
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<visualProperty default="1.0" name="NETWORK_SCALE_FACTOR"/>
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<visualProperty default="true" name="NETWORK_NODE_SELECTION"/>
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<visualProperty default="#F7FFFF" name="NETWORK_BACKGROUND_PAINT"/>
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<visualProperty default="false" name="NETWORK_ANNOTATION_SELECTION"/>
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<visualProperty default="false" name="NETWORK_NODE_LABEL_SELECTION"/>
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<visualProperty default="" name="NETWORK_TITLE"/>
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<visualProperty default="0.0" name="NETWORK_CENTER_X_LOCATION"/>
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<visualProperty default="true" name="NETWORK_EDGE_SELECTION"/>
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<visualProperty default="550.0" name="NETWORK_WIDTH"/>
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<visualProperty default="0.0" name="NETWORK_DEPTH"/>
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<visualProperty default="400.0" name="NETWORK_HEIGHT"/>
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<visualProperty default="0.0" name="NETWORK_CENTER_Z_LOCATION"/>
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<visualProperty default="0.0" name="NETWORK_CENTER_Y_LOCATION"/>
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<visualProperty default="false" name="NETWORK_FORCE_HIGH_DETAIL"/>
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</network>
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<node>
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<dependency value="true" name="nodeCustomGraphicsSizeSync"/>
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<dependency value="true" name="nodeSizeLocked"/>
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<visualProperty default="0.0" name="NODE_LABEL_ROTATION"/>
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<visualProperty default="14" name="NODE_LABEL_FONT_SIZE"/>
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<visualProperty default="0.0" name="NODE_CUSTOMGRAPHICS_SIZE_3"/>
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<visualProperty default="10.0" name="COMPOUND_NODE_PADDING"/>
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<visualProperty default="org.cytoscape.cg.model.NullCustomGraphics,0,[ Remove Graphics ]," name="NODE_CUSTOMGRAPHICS_6"/>
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<visualProperty default="0.0" name="NODE_CUSTOMGRAPHICS_SIZE_1"/>
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<visualProperty default="C,C,c,0.00,0.00" name="NODE_CUSTOMGRAPHICS_POSITION_9"/>
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<visualProperty default="0.0" name="NODE_Z_LOCATION"/>
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<visualProperty default="true" name="NODE_VISIBLE"/>
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<visualProperty default="" name="NODE_TOOLTIP"/>
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<visualProperty default="C,C,c,0.00,0.00" name="NODE_CUSTOMGRAPHICS_POSITION_1"/>
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<visualProperty default="500.0" name="NODE_LABEL_WIDTH"/>
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<visualProperty default="C,C,c,0.00,0.00" name="NODE_CUSTOMGRAPHICS_POSITION_5"/>
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<visualProperty default="#FE9929" name="NODE_FILL_COLOR"/>
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<visualProperty default="0.0" name="NODE_CUSTOMGRAPHICS_SIZE_2"/>
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<visualProperty default="#A63C06" name="NODE_LABEL_COLOR"/>
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<visualProperty default="0.0" name="NODE_DEPTH"/>
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<visualProperty default="7.0" name="NODE_BORDER_WIDTH"/>
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<visualProperty default="#FFFF00" name="NODE_SELECTED_PAINT"/>
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<visualProperty default="60.0" name="NODE_WIDTH"/>
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<visualProperty default="C,C,c,0.00,0.00" name="NODE_CUSTOMGRAPHICS_POSITION_3"/>
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<visualProperty default="org.cytoscape.cg.model.NullCustomGraphics,0,[ Remove Graphics ]," name="NODE_CUSTOMGRAPHICS_7"/>
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<visualProperty default="C,C,c,0.00,0.00" name="NODE_CUSTOMGRAPHICS_POSITION_4"/>
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<visualProperty default="org.cytoscape.cg.model.NullCustomGraphics,0,[ Remove Graphics ]," name="NODE_CUSTOMGRAPHICS_1"/>
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<visualProperty default="C,C,c,0.00,0.00" name="NODE_CUSTOMGRAPHICS_POSITION_8"/>
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<visualProperty default="SE,NW,c,-2.00,3.00" name="NODE_LABEL_POSITION"/>
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<visualProperty default="SOLID" name="NODE_BORDER_STROKE"/>
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<visualProperty default="255" name="NODE_BORDER_TRANSPARENCY"/>
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<visualProperty default="ROUND_RECTANGLE" name="NODE_LABEL_BACKGROUND_SHAPE"/>
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<visualProperty default="org.cytoscape.cg.model.NullCustomGraphics,0,[ Remove Graphics ]," name="NODE_CUSTOMGRAPHICS_8"/>
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<visualProperty default="0.0" name="NODE_CUSTOMGRAPHICS_SIZE_7"/>
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<visualProperty default="0.0" name="NODE_CUSTOMGRAPHICS_SIZE_8"/>
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<visualProperty default="18.0" name="NODE_SIZE"/>
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<visualProperty default="org.cytoscape.cg.model.NullCustomGraphics,0,[ Remove Graphics ]," name="NODE_CUSTOMGRAPHICS_5"/>
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<visualProperty default="org.cytoscape.cg.model.NullCustomGraphics,0,[ Remove Graphics ]," name="NODE_CUSTOMGRAPHICS_4"/>
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<visualProperty default="" name="NODE_LABEL">
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<passthroughMapping attributeName="name" attributeType="string"/>
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</visualProperty>
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<visualProperty default="255" name="NODE_LABEL_TRANSPARENCY"/>
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<visualProperty default="C,C,c,0.00,0.00" name="NODE_CUSTOMGRAPHICS_POSITION_6"/>
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<visualProperty default="ELLIPSE" name="NODE_SHAPE"/>
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<visualProperty default="#D1F5BE" name="NODE_BORDER_PAINT"/>
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<visualProperty default="true" name="NODE_NESTED_NETWORK_IMAGE_VISIBLE"/>
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<visualProperty default="C,C,c,0.00,0.00" name="NODE_CUSTOMGRAPHICS_POSITION_7"/>
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<visualProperty default="false" name="NODE_SELECTED"/>
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<visualProperty default="org.cytoscape.cg.model.NullCustomGraphics,0,[ Remove Graphics ]," name="NODE_CUSTOMGRAPHICS_9"/>
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<visualProperty default="org.cytoscape.cg.model.NullCustomGraphics,0,[ Remove Graphics ]," name="NODE_CUSTOMGRAPHICS_3"/>
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<visualProperty default="SansSerif.plain,plain,12" name="NODE_LABEL_FONT_FACE"/>
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<visualProperty default="C,C,c,0.00,0.00" name="NODE_CUSTOMGRAPHICS_POSITION_2"/>
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<visualProperty default="0.0" name="NODE_CUSTOMGRAPHICS_SIZE_4"/>
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<visualProperty default="#E1E1E1" name="NODE_LABEL_BACKGROUND_COLOR"/>
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<visualProperty default="0.0" name="NODE_X_LOCATION"/>
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<visualProperty default="org.cytoscape.cg.model.NullCustomGraphics,0,[ Remove Graphics ]," name="NODE_CUSTOMGRAPHICS_2"/>
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<visualProperty default="ROUND_RECTANGLE" name="COMPOUND_NODE_SHAPE"/>
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<visualProperty default="0.0" name="NODE_CUSTOMGRAPHICS_SIZE_6"/>
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<visualProperty default="0.0" name="NODE_CUSTOMGRAPHICS_SIZE_5"/>
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<visualProperty default="0.0" name="NODE_CUSTOMGRAPHICS_SIZE_9"/>
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<visualProperty default="175" name="NODE_LABEL_BACKGROUND_TRANSPARENCY"/>
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<visualProperty default="255" name="NODE_TRANSPARENCY"/>
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<visualProperty default="40.0" name="NODE_HEIGHT"/>
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<visualProperty default="0.0" name="NODE_Y_LOCATION"/>
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</node>
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<edge>
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<dependency value="true" name="arrowColorMatchesEdge"/>
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<visualProperty default="NONE" name="EDGE_LABEL_BACKGROUND_SHAPE"/>
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<visualProperty default="" name="EDGE_TOOLTIP"/>
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<visualProperty default="AUTO_BEND" name="EDGE_STACKING"/>
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<visualProperty default="#B6B6B6" name="EDGE_LABEL_BACKGROUND_COLOR"/>
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<visualProperty default="C,C,c,0.00,0.00" name="EDGE_LABEL_POSITION"/>
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<visualProperty default="0.728545744495502,-0.684997151948455,0.6456513365424503" name="EDGE_BEND"/>
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<visualProperty default="10" name="EDGE_LABEL_FONT_SIZE"/>
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<visualProperty default="NONE" name="EDGE_TARGET_ARROW_SHAPE"/>
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<visualProperty default="false" name="EDGE_SELECTED"/>
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<visualProperty default="#000000" name="EDGE_LABEL_COLOR"/>
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<visualProperty default="#FFFFFF" name="EDGE_STROKE_UNSELECTED_PAINT"/>
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<visualProperty default="#000000" name="EDGE_TARGET_ARROW_UNSELECTED_PAINT"/>
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<visualProperty default="255" name="EDGE_LABEL_TRANSPARENCY"/>
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<visualProperty default="255" name="EDGE_LABEL_BACKGROUND_TRANSPARENCY"/>
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<visualProperty default="true" name="EDGE_CURVED"/>
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<visualProperty default="NONE" name="EDGE_SOURCE_ARROW_SHAPE"/>
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<visualProperty default="0.0" name="EDGE_LABEL_ROTATION"/>
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<visualProperty default="SansSerif.plain,plain,10" name="EDGE_LABEL_FONT_FACE"/>
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||||||
<visualProperty default="0.5" name="EDGE_STACKING_DENSITY"/>
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<visualProperty default="#FFFF00" name="EDGE_SOURCE_ARROW_SELECTED_PAINT"/>
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||||||
<visualProperty default="false" name="EDGE_LABEL_AUTOROTATE"/>
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|
||||||
<visualProperty default="3.0" name="EDGE_WIDTH"/>
|
|
||||||
<visualProperty default="#FF0000" name="EDGE_STROKE_SELECTED_PAINT"/>
|
|
||||||
<visualProperty default="true" name="EDGE_VISIBLE"/>
|
|
||||||
<visualProperty default="#577399" name="EDGE_UNSELECTED_PAINT"/>
|
|
||||||
<visualProperty default="#000000" name="EDGE_SOURCE_ARROW_UNSELECTED_PAINT"/>
|
|
||||||
<visualProperty default="" name="EDGE_LABEL"/>
|
|
||||||
<visualProperty default="255" name="EDGE_TRANSPARENCY"/>
|
|
||||||
<visualProperty default="SOLID" name="EDGE_LINE_TYPE"/>
|
|
||||||
<visualProperty default="6.0" name="EDGE_TARGET_ARROW_SIZE"/>
|
|
||||||
<visualProperty default="200.0" name="EDGE_LABEL_WIDTH"/>
|
|
||||||
<visualProperty default="0.0" name="EDGE_Z_ORDER"/>
|
|
||||||
<visualProperty default="6.0" name="EDGE_SOURCE_ARROW_SIZE"/>
|
|
||||||
<visualProperty default="#FFFF00" name="EDGE_TARGET_ARROW_SELECTED_PAINT"/>
|
|
||||||
</edge>
|
|
||||||
</visualStyle>
|
|
||||||
</vizmap>
|
|
||||||
@ -1,37 +0,0 @@
|
|||||||
<?xml version='1.0' encoding='utf-8'?>
|
|
||||||
<graphml xmlns="http://graphml.graphdrawing.org/xmlns" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://graphml.graphdrawing.org/xmlns http://graphml.graphdrawing.org/xmlns/1.0/graphml.xsd">
|
|
||||||
<key id="d1" for="edge" attr.name="weight" attr.type="long" />
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<key id="d0" for="node" attr.name="degree_weighted" attr.type="long" />
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<graph edgedefault="directed">
|
|
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<node id="1">
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|
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<data key="d0">14</data>
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|
||||||
<data key="d0">10</data>
|
|
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</node>
|
|
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|
|
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|
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</node>
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|
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<data key="d0">12</data>
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|
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||||||
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|
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||||||
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|
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|
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||||||
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|
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|
|
||||||
<data key="d1">3</data>
|
|
||||||
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|
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||||||
<edge source="2" target="1">
|
|
||||||
<data key="d1">6</data>
|
|
||||||
</edge>
|
|
||||||
<edge source="3" target="4">
|
|
||||||
<data key="d1">4</data>
|
|
||||||
</edge>
|
|
||||||
</graph>
|
|
||||||
</graphml>
|
|
||||||
@ -1,73 +0,0 @@
|
|||||||
<?xml version='1.0' encoding='utf-8'?>
|
|
||||||
<graphml xmlns="http://graphml.graphdrawing.org/xmlns" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://graphml.graphdrawing.org/xmlns http://graphml.graphdrawing.org/xmlns/1.0/graphml.xsd">
|
|
||||||
<key id="d1" for="edge" attr.name="weight" attr.type="long" />
|
|
||||||
<key id="d0" for="node" attr.name="degree_weighted" attr.type="long" />
|
|
||||||
<graph edgedefault="undirected">
|
|
||||||
<node id="Kontrolle">
|
|
||||||
<data key="d0">2</data>
|
|
||||||
</node>
|
|
||||||
<node id="Lichtschranke">
|
|
||||||
<data key="d0">1</data>
|
|
||||||
</node>
|
|
||||||
<node id="Überprüfung">
|
|
||||||
<data key="d0">4</data>
|
|
||||||
</node>
|
|
||||||
<node id="Spannrolle">
|
|
||||||
<data key="d0">1</data>
|
|
||||||
</node>
|
|
||||||
<node id="Druckventil">
|
|
||||||
<data key="d0">1</data>
|
|
||||||
</node>
|
|
||||||
<node id="Schmiernippel">
|
|
||||||
<data key="d0">1</data>
|
|
||||||
</node>
|
|
||||||
<node id="Inspektion">
|
|
||||||
<data key="d0">2</data>
|
|
||||||
</node>
|
|
||||||
<node id="Förderbänder">
|
|
||||||
<data key="d0">1</data>
|
|
||||||
</node>
|
|
||||||
<node id="Reinigung">
|
|
||||||
<data key="d0">1</data>
|
|
||||||
</node>
|
|
||||||
<node id="Luftfilter">
|
|
||||||
<data key="d0">1</data>
|
|
||||||
</node>
|
|
||||||
<node id="Schutzabdeckung">
|
|
||||||
<data key="d0">1</data>
|
|
||||||
</node>
|
|
||||||
<node id="Ölstand">
|
|
||||||
<data key="d0">1</data>
|
|
||||||
</node>
|
|
||||||
<node id="Hydraulik">
|
|
||||||
<data key="d0">1</data>
|
|
||||||
</node>
|
|
||||||
<edge source="Kontrolle" target="Lichtschranke">
|
|
||||||
<data key="d1">1</data>
|
|
||||||
</edge>
|
|
||||||
<edge source="Kontrolle" target="Schmiernippel">
|
|
||||||
<data key="d1">1</data>
|
|
||||||
</edge>
|
|
||||||
<edge source="Überprüfung" target="Spannrolle">
|
|
||||||
<data key="d1">1</data>
|
|
||||||
</edge>
|
|
||||||
<edge source="Überprüfung" target="Druckventil">
|
|
||||||
<data key="d1">1</data>
|
|
||||||
</edge>
|
|
||||||
<edge source="Überprüfung" target="Ölstand">
|
|
||||||
<data key="d1">1</data>
|
|
||||||
</edge>
|
|
||||||
<edge source="Überprüfung" target="Hydraulik">
|
|
||||||
<data key="d1">1</data>
|
|
||||||
</edge>
|
|
||||||
<edge source="Inspektion" target="Förderbänder">
|
|
||||||
<data key="d1">1</data>
|
|
||||||
</edge>
|
|
||||||
<edge source="Inspektion" target="Schutzabdeckung">
|
|
||||||
<data key="d1">1</data>
|
|
||||||
</edge>
|
|
||||||
<edge source="Reinigung" target="Luftfilter">
|
|
||||||
<data key="d1">1</data>
|
|
||||||
</edge>
|
|
||||||
</graph>
|
|
||||||
</graphml>
|
|
||||||
Binary file not shown.
@ -1,6 +1,6 @@
|
|||||||
[project]
|
[project]
|
||||||
name = "lang-main"
|
name = "lang-main"
|
||||||
version = "0.1.0a9"
|
version = "0.1.0a14"
|
||||||
description = "Several tools to analyse TOM's data with strong focus on language processing"
|
description = "Several tools to analyse TOM's data with strong focus on language processing"
|
||||||
authors = [
|
authors = [
|
||||||
{name = "d-opt GmbH, resp. Florian Förster", email = "f.foerster@d-opt.com"},
|
{name = "d-opt GmbH, resp. Florian Förster", email = "f.foerster@d-opt.com"},
|
||||||
@ -154,7 +154,7 @@ directory = "reports/coverage"
|
|||||||
|
|
||||||
|
|
||||||
[tool.bumpversion]
|
[tool.bumpversion]
|
||||||
current_version = "0.1.0a9"
|
current_version = "0.1.0a14"
|
||||||
parse = """(?x)
|
parse = """(?x)
|
||||||
(?P<major>0|[1-9]\\d*)\\.
|
(?P<major>0|[1-9]\\d*)\\.
|
||||||
(?P<minor>0|[1-9]\\d*)\\.
|
(?P<minor>0|[1-9]\\d*)\\.
|
||||||
|
|||||||
@ -193,7 +193,9 @@ def analyse_feature(
|
|||||||
|
|
||||||
result_df = pd.concat([result_df, conc_df], ignore_index=True)
|
result_df = pd.concat([result_df, conc_df], ignore_index=True)
|
||||||
|
|
||||||
result_df = result_df.sort_values(by='num_occur', ascending=False).copy()
|
result_df = result_df.sort_values(
|
||||||
|
by=['num_occur', 'len'], ascending=[False, False]
|
||||||
|
).copy()
|
||||||
|
|
||||||
return (result_df,)
|
return (result_df,)
|
||||||
|
|
||||||
|
|||||||
@ -88,14 +88,17 @@ SPACY_MODEL_NAME: Final[str | SpacyModelTypes] = os.environ.get(
|
|||||||
'LANG_MAIN_SPACY_MODEL', SpacyModelTypes.DE_CORE_NEWS_SM
|
'LANG_MAIN_SPACY_MODEL', SpacyModelTypes.DE_CORE_NEWS_SM
|
||||||
)
|
)
|
||||||
STFR_MODEL_NAME: Final[str | STFRModelTypes] = os.environ.get(
|
STFR_MODEL_NAME: Final[str | STFRModelTypes] = os.environ.get(
|
||||||
'LANG_MAIN_STFR_MODEL', STFRModelTypes.ALL_MPNET_BASE_V2
|
'LANG_MAIN_STFR_MODEL', STFRModelTypes.E5_BASE_STS_EN_DE
|
||||||
)
|
)
|
||||||
|
STFR_CUSTOM_MODELS: Final[dict[tuple[STFRModelTypes, STFRBackends], bool]] = {
|
||||||
|
(STFRModelTypes.E5_BASE_STS_EN_DE, STFRBackends.ONNX): True,
|
||||||
|
}
|
||||||
STFR_DEVICE: Final[STFRDeviceTypes] = STFRDeviceTypes.CPU
|
STFR_DEVICE: Final[STFRDeviceTypes] = STFRDeviceTypes.CPU
|
||||||
STFR_SIMILARITY: Final[SimilarityFunction] = SimilarityFunction.COSINE
|
STFR_SIMILARITY: Final[SimilarityFunction] = SimilarityFunction.COSINE
|
||||||
STFR_BACKEND: Final[str | STFRBackends] = os.environ.get(
|
STFR_BACKEND: Final[str | STFRBackends] = os.environ.get(
|
||||||
'LANG_MAIN_STFR_BACKEND', STFRBackends.TORCH
|
'LANG_MAIN_STFR_BACKEND', STFRBackends.TORCH
|
||||||
)
|
)
|
||||||
stfr_model_args_default: STFRModelArgs = {}
|
stfr_model_args_default: STFRModelArgs = {'torch_dtype': 'float32'}
|
||||||
stfr_model_args_onnx: STFRModelArgs = {
|
stfr_model_args_onnx: STFRModelArgs = {
|
||||||
'file_name': STFRQuantFilenames.ONNX_Q_UINT8,
|
'file_name': STFRQuantFilenames.ONNX_Q_UINT8,
|
||||||
'provider': ONNXExecutionProvider.CPU,
|
'provider': ONNXExecutionProvider.CPU,
|
||||||
|
|||||||
@ -12,8 +12,10 @@ from typing import (
|
|||||||
from sentence_transformers import SentenceTransformer, SimilarityFunction
|
from sentence_transformers import SentenceTransformer, SimilarityFunction
|
||||||
|
|
||||||
from lang_main.constants import (
|
from lang_main.constants import (
|
||||||
|
MODEL_BASE_FOLDER,
|
||||||
SPACY_MODEL_NAME,
|
SPACY_MODEL_NAME,
|
||||||
STFR_BACKEND,
|
STFR_BACKEND,
|
||||||
|
STFR_CUSTOM_MODELS,
|
||||||
STFR_DEVICE,
|
STFR_DEVICE,
|
||||||
STFR_MODEL_ARGS,
|
STFR_MODEL_ARGS,
|
||||||
STFR_MODEL_NAME,
|
STFR_MODEL_NAME,
|
||||||
@ -28,6 +30,7 @@ from lang_main.types import (
|
|||||||
STFRBackends,
|
STFRBackends,
|
||||||
STFRDeviceTypes,
|
STFRDeviceTypes,
|
||||||
STFRModelArgs,
|
STFRModelArgs,
|
||||||
|
STFRModelTypes,
|
||||||
)
|
)
|
||||||
|
|
||||||
|
|
||||||
@ -74,22 +77,67 @@ def load_spacy(
|
|||||||
return pretrained_model
|
return pretrained_model
|
||||||
|
|
||||||
|
|
||||||
|
def _preprocess_STFR_model_name(
|
||||||
|
model_name: STFRModelTypes,
|
||||||
|
backend: STFRBackends,
|
||||||
|
) -> str:
|
||||||
|
"""utility function to parse specific model names to their
|
||||||
|
local file paths per backend
|
||||||
|
necessary for models not present on the Huggingface Hub (like
|
||||||
|
own pretrained or optimised models)
|
||||||
|
only if chosen model and backend in combination are defined a local
|
||||||
|
file path is generated
|
||||||
|
|
||||||
|
Parameters
|
||||||
|
----------
|
||||||
|
model_name : STFRModelTypes
|
||||||
|
model name given by configuration
|
||||||
|
backend: STFRBackends
|
||||||
|
backend given by configuration
|
||||||
|
|
||||||
|
Returns
|
||||||
|
-------
|
||||||
|
str
|
||||||
|
model name or specific file path if applicable
|
||||||
|
"""
|
||||||
|
combination = (model_name, backend)
|
||||||
|
model_name_or_path: str
|
||||||
|
if combination in STFR_CUSTOM_MODELS and STFR_CUSTOM_MODELS[combination]:
|
||||||
|
# !! defined that each model is placed in a folder with its model name
|
||||||
|
# !! without any user names
|
||||||
|
folder_name = model_name.split('/')[-1]
|
||||||
|
model_path = MODEL_BASE_FOLDER / folder_name
|
||||||
|
if not model_path.exists():
|
||||||
|
raise FileNotFoundError(
|
||||||
|
f'Target model >{model_name}< not found under {model_path}'
|
||||||
|
)
|
||||||
|
model_name_or_path = str(model_path)
|
||||||
|
else:
|
||||||
|
model_name_or_path = model_name
|
||||||
|
|
||||||
|
return model_name_or_path
|
||||||
|
|
||||||
|
|
||||||
def load_sentence_transformer(
|
def load_sentence_transformer(
|
||||||
model_name: str,
|
model_name: STFRModelTypes,
|
||||||
similarity_func: SimilarityFunction = SimilarityFunction.COSINE,
|
similarity_func: SimilarityFunction = SimilarityFunction.COSINE,
|
||||||
backend: STFRBackends = STFRBackends.TORCH,
|
backend: STFRBackends = STFRBackends.TORCH,
|
||||||
device: STFRDeviceTypes = STFRDeviceTypes.CPU,
|
device: STFRDeviceTypes = STFRDeviceTypes.CPU,
|
||||||
local_files_only: bool = True,
|
local_files_only: bool = True,
|
||||||
|
trust_remote_code: bool = False,
|
||||||
model_save_folder: str | None = None,
|
model_save_folder: str | None = None,
|
||||||
model_kwargs: STFRModelArgs | dict[str, Any] | None = None,
|
model_kwargs: STFRModelArgs | dict[str, Any] | None = None,
|
||||||
) -> SentenceTransformer:
|
) -> SentenceTransformer:
|
||||||
|
model_name_or_path = _preprocess_STFR_model_name(model_name=model_name, backend=backend)
|
||||||
|
|
||||||
return SentenceTransformer(
|
return SentenceTransformer(
|
||||||
model_name_or_path=model_name,
|
model_name_or_path=model_name_or_path,
|
||||||
similarity_fn_name=similarity_func,
|
similarity_fn_name=similarity_func,
|
||||||
backend=backend, # type: ignore Literal matches Enum
|
backend=backend, # type: ignore Literal matches Enum
|
||||||
device=device,
|
device=device,
|
||||||
cache_folder=model_save_folder,
|
cache_folder=model_save_folder,
|
||||||
local_files_only=local_files_only,
|
local_files_only=local_files_only,
|
||||||
|
trust_remote_code=trust_remote_code,
|
||||||
model_kwargs=model_kwargs, # type: ignore
|
model_kwargs=model_kwargs, # type: ignore
|
||||||
)
|
)
|
||||||
|
|
||||||
@ -99,7 +147,7 @@ MODEL_LOADER_MAP: Final[ModelLoaderMap] = {
|
|||||||
LanguageModels.SENTENCE_TRANSFORMER: {
|
LanguageModels.SENTENCE_TRANSFORMER: {
|
||||||
'func': load_sentence_transformer,
|
'func': load_sentence_transformer,
|
||||||
'kwargs': {
|
'kwargs': {
|
||||||
'model_name': STFR_MODEL_NAME,
|
'model_name_or_path': STFR_MODEL_NAME,
|
||||||
'similarity_func': STFR_SIMILARITY,
|
'similarity_func': STFR_SIMILARITY,
|
||||||
'backend': STFR_BACKEND,
|
'backend': STFR_BACKEND,
|
||||||
'device': STFR_DEVICE,
|
'device': STFR_DEVICE,
|
||||||
|
|||||||
@ -50,6 +50,12 @@ class STFRModelTypes(enum.StrEnum):
|
|||||||
ALL_DISTILROBERTA_V1 = 'all-distilroberta-v1'
|
ALL_DISTILROBERTA_V1 = 'all-distilroberta-v1'
|
||||||
ALL_MINI_LM_L12_V2 = 'all-MiniLM-L12-v2'
|
ALL_MINI_LM_L12_V2 = 'all-MiniLM-L12-v2'
|
||||||
ALL_MINI_LM_L6_V2 = 'all-MiniLM-L6-v2'
|
ALL_MINI_LM_L6_V2 = 'all-MiniLM-L6-v2'
|
||||||
|
GERMAN_SEMANTIC_STS_V2 = 'aari1995/German_Semantic_STS_V2'
|
||||||
|
PARAPHRASE_MULTI_MPNET_BASE_V2 = 'paraphrase-multilingual-mpnet-base-v2'
|
||||||
|
JINAAI_BASE_DE_V2 = (
|
||||||
|
'jinaai/jina-embeddings-v2-base-de' # only for testing, non-commercial
|
||||||
|
)
|
||||||
|
E5_BASE_STS_EN_DE = 'danielheinz/e5-base-sts-en-de'
|
||||||
|
|
||||||
|
|
||||||
class SpacyModelTypes(enum.StrEnum):
|
class SpacyModelTypes(enum.StrEnum):
|
||||||
@ -63,7 +69,15 @@ class STFRQuantFilenames(enum.StrEnum):
|
|||||||
ONNX_Q_UINT8 = 'onnx/model_quint8_avx2.onnx'
|
ONNX_Q_UINT8 = 'onnx/model_quint8_avx2.onnx'
|
||||||
|
|
||||||
|
|
||||||
|
TorchDTypes: TypeAlias = Literal[
|
||||||
|
'float16',
|
||||||
|
'bfloat16',
|
||||||
|
'float32',
|
||||||
|
]
|
||||||
|
|
||||||
|
|
||||||
class STFRModelArgs(TypedDict):
|
class STFRModelArgs(TypedDict):
|
||||||
|
torch_dtype: NotRequired[TorchDTypes]
|
||||||
provider: NotRequired[ONNXExecutionProvider]
|
provider: NotRequired[ONNXExecutionProvider]
|
||||||
file_name: NotRequired[STFRQuantFilenames]
|
file_name: NotRequired[STFRQuantFilenames]
|
||||||
export: NotRequired[bool]
|
export: NotRequired[bool]
|
||||||
|
|||||||
Loading…
x
Reference in New Issue
Block a user