improved imports, dummy dataset generation

notebooks/misc.ipynb

@@ -13,7 +13,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 2,
+   "execution_count": 1,
    "id": "d46b6ce8-b51b-49e0-b494-fc24fda0f73f",
    "metadata": {},
    "outputs": [],
@@ -23,7 +23,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 3,
+   "execution_count": 2,
    "id": "6fde72d3-b95b-4d37-be71-a7d3661dd3f5",
    "metadata": {},
    "outputs": [
@@ -40,7 +40,7 @@
        "'You are connected to Cytoscape!'"
       ]
      },
-     "execution_count": 3,
+     "execution_count": 2,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -52,46 +52,41 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "id": "43eeb870-6f97-4029-ac0d-210315ccaabf",
+   "id": "187ced81-6304-49bd-afc7-c18e656bc9a3",
    "metadata": {},
    "outputs": [],
    "source": []
   },
   {
    "cell_type": "code",
-   "execution_count": 2,
+   "execution_count": 1,
    "id": "af118d77-d87a-4687-be5b-e810a24c403e",
    "metadata": {
     "scrolled": true
    },
    "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "2024-07-31 06:33:53 +0000 | io:INFO | Loaded TOML config file successfully.\n"
-     ]
-    },
     {
      "name": "stderr",
      "output_type": "stream",
      "text": [
       "A:\\Arbeitsaufgaben\\lang-main\\.venv\\Lib\\site-packages\\transformers\\utils\\generic.py:441: UserWarning: torch.utils._pytree._register_pytree_node is deprecated. Please use torch.utils._pytree.register_pytree_node instead.\n",
-      "  _torch_pytree._register_pytree_node(\n",
+      "  _torch_pytree._register_pytree_node(\n"
-      "A:\\Arbeitsaufgaben\\lang-main\\.venv\\Lib\\site-packages\\huggingface_hub\\file_download.py:1132: FutureWarning: `resume_download` is deprecated and will be removed in version 1.0.0. Downloads always resume when possible. If you want to force a new download, use `force_download=True`.\n",
+     ]
-      "  warnings.warn(\n",
+    },
-      "A:\\Arbeitsaufgaben\\lang-main\\.venv\\Lib\\site-packages\\transformers\\utils\\generic.py:309: UserWarning: torch.utils._pytree._register_pytree_node is deprecated. Please use torch.utils._pytree.register_pytree_node instead.\n",
+    {
-      "  _torch_pytree._register_pytree_node(\n",
+     "name": "stdout",
-      "A:\\Arbeitsaufgaben\\lang-main\\.venv\\Lib\\site-packages\\transformers\\utils\\generic.py:309: UserWarning: torch.utils._pytree._register_pytree_node is deprecated. Please use torch.utils._pytree.register_pytree_node instead.\n",
+     "output_type": "stream",
-      "  _torch_pytree._register_pytree_node(\n",
+     "text": [
-      "A:\\Arbeitsaufgaben\\lang-main\\.venv\\Lib\\site-packages\\huggingface_hub\\file_download.py:1132: FutureWarning: `resume_download` is deprecated and will be removed in version 1.0.0. Downloads always resume when possible. If you want to force a new download, use `force_download=True`.\n",
+      "2024-08-07 07:36:54 +0000 | io:INFO | Loaded TOML config file successfully.\n"
-      "  warnings.warn(\n"
      ]
     }
    ],
    "source": [
     "from lang_main import io\n",
     "from lang_main.analysis.graphs import rescale_edge_weights, get_graph_metadata\n",
+    "from lang_main import model_loader\n",
+    "from lang_main.types import LanguageModels\n",
+    "from lang_main.constants import MODEL_LOADER_MAP\n",
     "\n",
     "from pathlib import Path\n",
     "import pickle\n",
@@ -112,6 +107,88 @@
     "#p4c.py4cytoscape_logger.detail_logger.addHandler(NullHandler())"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "59cbcf38-6fe1-403b-9c10-f107e28185f0",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 1,
+   "id": "a33cb410-f774-4cc9-b972-bf05df36d3d7",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "A:\\Arbeitsaufgaben\\lang-main\\.venv\\Lib\\site-packages\\transformers\\utils\\generic.py:441: UserWarning: torch.utils._pytree._register_pytree_node is deprecated. Please use torch.utils._pytree.register_pytree_node instead.\n",
+      "  _torch_pytree._register_pytree_node(\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "spacy imports\n",
+      "end\n",
+      "Nothing\n",
+      "2024-08-07 07:51:22 +0000 | io:INFO | Loaded TOML config file successfully.\n"
+     ]
+    }
+   ],
+   "source": [
+    "from lang_main import __init__"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "7f55780a-a91e-49ef-a24f-503eaf2efae8",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 2,
+   "id": "2d91512f-8976-452e-acc9-4bff3dc33dd1",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "A:\\Arbeitsaufgaben\\lang-main\\.venv\\Lib\\site-packages\\transformers\\utils\\generic.py:309: UserWarning: torch.utils._pytree._register_pytree_node is deprecated. Please use torch.utils._pytree.register_pytree_node instead.\n",
+      "  _torch_pytree._register_pytree_node(\n"
+     ]
+    },
+    {
+     "data": {
+      "text/plain": [
+       "<spacy.lang.de.German at 0x24040684090>"
+      ]
+     },
+     "execution_count": 2,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "model_loader.instantiate_model(MODEL_LOADER_MAP, LanguageModels.SPACY)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "7fe9337f-a11b-4eab-ae46-a8a4ccf3f461",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  },
   {
    "cell_type": "code",
    "execution_count": 3,
@@ -3753,7 +3830,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 11,
+   "execution_count": 3,
    "id": "fcd9247f-c4f9-4f73-9fd3-2ab56700073f",
    "metadata": {},
    "outputs": [
@@ -3761,23 +3838,7 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "2024-07-10 11:19:15 +0000 | py4cytoscape_logger:DEBUG | Calling cytoscape_ping()\n",
+      "You are connected to Cytoscape!\n"
-      "2024-07-10 11:19:15 +0000 | py4cytoscape_logger:DEBUG | ǀCalling cytoscape_version_info(base_url='http://127.0.0.1:1234/v1')\n",
-      "2024-07-10 11:19:15 +0000 | py4cytoscape_logger:DEBUG | ǀǀCalling cyrest_get('version', base_url='http://127.0.0.1:1234/v1')\n",
-      "2024-07-10 11:19:15 +0000 | py4cytoscape_logger:DEBUG | ǀǀHTTP GET(http://127.0.0.1:1234/v1/version)\n",
-      "2024-07-10 11:19:15 +0000 | py4cytoscape_logger:DEBUG | ǀǀOK[200], content: {\"apiVersion\":\"v1\",\"cytoscapeVersion\":\"3.10.2\"}\n",
-      "2024-07-10 11:19:15 +0000 | py4cytoscape_logger:DEBUG | ǀǀReturning 'cyrest_get': {'apiVersion': 'v1', 'cytoscapeVersion': '3.10.2'}\n",
-      "2024-07-10 11:19:15 +0000 | py4cytoscape_logger:DEBUG | ǀReturning 'cytoscape_version_info': {'apiVersion': 'v1', 'cytoscapeVersion': '3.10.2', 'automationAPIVersion': '1.9.0', 'py4cytoscapeVersion': '1.9.0'}\n",
-      "You are connected to Cytoscape!\n",
-      "2024-07-10 11:19:15 +0000 | py4cytoscape_logger:DEBUG | Returning 'cytoscape_ping': 'You are connected to Cytoscape!'\n",
-      "2024-07-10 11:19:15 +0000 | py4cytoscape_logger:DEBUG | --------------------\n",
-      "2024-07-10 11:19:15 +0000 | py4cytoscape_logger:DEBUG | Calling cytoscape_version_info()\n",
-      "2024-07-10 11:19:15 +0000 | py4cytoscape_logger:DEBUG | ǀCalling cyrest_get('version', base_url='http://127.0.0.1:1234/v1')\n",
-      "2024-07-10 11:19:15 +0000 | py4cytoscape_logger:DEBUG | ǀHTTP GET(http://127.0.0.1:1234/v1/version)\n",
-      "2024-07-10 11:19:15 +0000 | py4cytoscape_logger:DEBUG | ǀOK[200], content: {\"apiVersion\":\"v1\",\"cytoscapeVersion\":\"3.10.2\"}\n",
-      "2024-07-10 11:19:15 +0000 | py4cytoscape_logger:DEBUG | ǀReturning 'cyrest_get': {'apiVersion': 'v1', 'cytoscapeVersion': '3.10.2'}\n",
-      "2024-07-10 11:19:15 +0000 | py4cytoscape_logger:DEBUG | Returning 'cytoscape_version_info': {'apiVersion': 'v1', 'cytoscapeVersion': '3.10.2', 'automationAPIVersion': '1.9.0', 'py4cytoscapeVersion': '1.9.0'}\n",
-      "2024-07-10 11:19:16 +0000 | py4cytoscape_logger:DEBUG | --------------------\n"
      ]
     },
     {
@@ -3789,7 +3850,7 @@
        " 'py4cytoscapeVersion': '1.9.0'}"
       ]
      },
-     "execution_count": 11,
+     "execution_count": 3,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -3803,7 +3864,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 5,
+   "execution_count": 4,
    "id": "b9290659-e33c-47fc-8d89-7aa3dd6e843a",
    "metadata": {},
    "outputs": [],
@@ -3815,7 +3876,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 6,
+   "execution_count": 5,
    "id": "979d6def-83ac-47f6-ac6f-0d20ddf48d48",
    "metadata": {},
    "outputs": [
@@ -3882,7 +3943,7 @@
        "3  node 3     B      5"
       ]
      },
-     "execution_count": 6,
+     "execution_count": 5,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -3893,7 +3954,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 7,
+   "execution_count": 6,
    "id": "81702429-5735-48de-96a4-1f32c7c7d68c",
    "metadata": {},
    "outputs": [
@@ -3965,7 +4026,7 @@
        "3  node 2  node 3   interacts     9.9"
       ]
      },
-     "execution_count": 7,
+     "execution_count": 6,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -3976,7 +4037,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 8,
+   "execution_count": 7,
    "id": "6b29d561-fffd-4a5b-91c1-8fb6a075ae4f",
    "metadata": {},
    "outputs": [
@@ -3994,7 +4055,7 @@
        "128"
       ]
      },
-     "execution_count": 8,
+     "execution_count": 7,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -4003,6 +4064,187 @@
     "p4c.create_network_from_data_frames(nodes, edges, title=\"my first network\", collection=\"DataFrame Example\")"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": 8,
+   "id": "1e87b4d9-6ef0-4108-81ff-e0124e45b793",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "p4c.hide_all_panels()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 32,
+   "id": "23706ea9-b661-428e-a4de-ac4543aafc76",
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "''"
+      ]
+     },
+     "execution_count": 32,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "p4c.set_network_zoom_bypass(1.5, bypass=False)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 25,
+   "id": "9c7e7fa0-8b17-43f6-9076-3e117748b06b",
+   "metadata": {
+    "collapsed": true,
+    "jupyter": {
+     "outputs_hidden": true
+    }
+   },
+   "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "In cyrest_delete(): Bypass Visual Property does not exist: NETWORK_SCALE_FACTOR\n"
+     ]
+    },
+    {
+     "ename": "CyError",
+     "evalue": "In cyrest_delete(): Bypass Visual Property does not exist: NETWORK_SCALE_FACTOR",
+     "output_type": "error",
+     "traceback": [
+      "\u001b[1;31m---------------------------------------------------------------------------\u001b[0m",
+      "\u001b[1;31mHTTPError\u001b[0m                                 Traceback (most recent call last)",
+      "File \u001b[1;32mA:\\Arbeitsaufgaben\\lang-main\\.venv\\Lib\\site-packages\\py4cytoscape\\commands.py:109\u001b[0m, in \u001b[0;36mcyrest_delete\u001b[1;34m(operation, parameters, base_url, require_json)\u001b[0m\n\u001b[0;32m    108\u001b[0m r \u001b[38;5;241m=\u001b[39m _do_request(\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mDELETE\u001b[39m\u001b[38;5;124m'\u001b[39m, url, params\u001b[38;5;241m=\u001b[39mparameters, base_url\u001b[38;5;241m=\u001b[39mbase_url)\n\u001b[1;32m--> 109\u001b[0m \u001b[43mr\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mraise_for_status\u001b[49m\u001b[43m(\u001b[49m\u001b[43m)\u001b[49m\n\u001b[0;32m    110\u001b[0m \u001b[38;5;28;01mtry\u001b[39;00m:\n",
+      "File \u001b[1;32mA:\\Arbeitsaufgaben\\lang-main\\.venv\\Lib\\site-packages\\requests\\models.py:1021\u001b[0m, in \u001b[0;36mResponse.raise_for_status\u001b[1;34m(self)\u001b[0m\n\u001b[0;32m   1020\u001b[0m \u001b[38;5;28;01mif\u001b[39;00m http_error_msg:\n\u001b[1;32m-> 1021\u001b[0m     \u001b[38;5;28;01mraise\u001b[39;00m HTTPError(http_error_msg, response\u001b[38;5;241m=\u001b[39m\u001b[38;5;28mself\u001b[39m)\n",
+      "\u001b[1;31mHTTPError\u001b[0m: 404 Client Error: Not Found for url: http://127.0.0.1:1234/v1/networks/3004/views/3129/network/NETWORK_SCALE_FACTOR/bypass",
+      "\nDuring handling of the above exception, another exception occurred:\n",
+      "\u001b[1;31mCyError\u001b[0m                                   Traceback (most recent call last)",
+      "Cell \u001b[1;32mIn[25], line 1\u001b[0m\n\u001b[1;32m----> 1\u001b[0m \u001b[43mp4c\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mclear_network_zoom_bypass\u001b[49m\u001b[43m(\u001b[49m\u001b[43m)\u001b[49m\n",
+      "File \u001b[1;32mA:\\Arbeitsaufgaben\\lang-main\\.venv\\Lib\\site-packages\\py4cytoscape\\py4cytoscape_logger.py:133\u001b[0m, in \u001b[0;36mcy_log.<locals>.wrapper_log\u001b[1;34m(*args, **kwargs)\u001b[0m\n\u001b[0;32m    131\u001b[0m     \u001b[38;5;28;01mreturn\u001b[39;00m log_return(func, value)\n\u001b[0;32m    132\u001b[0m \u001b[38;5;28;01mexcept\u001b[39;00m \u001b[38;5;167;01mException\u001b[39;00m \u001b[38;5;28;01mas\u001b[39;00m e:\n\u001b[1;32m--> 133\u001b[0m     \u001b[43mlog_exception\u001b[49m\u001b[43m(\u001b[49m\u001b[43mfunc\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43me\u001b[49m\u001b[43m)\u001b[49m\n\u001b[0;32m    134\u001b[0m \u001b[38;5;28;01mfinally\u001b[39;00m:\n\u001b[0;32m    135\u001b[0m     log_finally()\n",
+      "File \u001b[1;32mA:\\Arbeitsaufgaben\\lang-main\\.venv\\Lib\\site-packages\\py4cytoscape\\py4cytoscape_logger.py:130\u001b[0m, in \u001b[0;36mcy_log.<locals>.wrapper_log\u001b[1;34m(*args, **kwargs)\u001b[0m\n\u001b[0;32m    128\u001b[0m log_incoming(func, \u001b[38;5;241m*\u001b[39margs, \u001b[38;5;241m*\u001b[39m\u001b[38;5;241m*\u001b[39mkwargs)\n\u001b[0;32m    129\u001b[0m \u001b[38;5;28;01mtry\u001b[39;00m:\n\u001b[1;32m--> 130\u001b[0m     value \u001b[38;5;241m=\u001b[39m \u001b[43mfunc\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[43margs\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[43mkwargs\u001b[49m\u001b[43m)\u001b[49m \u001b[38;5;66;03m# Call function being logged\u001b[39;00m\n\u001b[0;32m    131\u001b[0m     \u001b[38;5;28;01mreturn\u001b[39;00m log_return(func, value)\n\u001b[0;32m    132\u001b[0m \u001b[38;5;28;01mexcept\u001b[39;00m \u001b[38;5;167;01mException\u001b[39;00m \u001b[38;5;28;01mas\u001b[39;00m e:\n",
+      "File \u001b[1;32mA:\\Arbeitsaufgaben\\lang-main\\.venv\\Lib\\site-packages\\py4cytoscape\\style_bypasses.py:2726\u001b[0m, in \u001b[0;36mclear_network_zoom_bypass\u001b[1;34m(network, base_url)\u001b[0m\n\u001b[0;32m   2697\u001b[0m \u001b[38;5;129m@cy_log\u001b[39m\n\u001b[0;32m   2698\u001b[0m \u001b[38;5;28;01mdef\u001b[39;00m \u001b[38;5;21mclear_network_zoom_bypass\u001b[39m(network\u001b[38;5;241m=\u001b[39m\u001b[38;5;28;01mNone\u001b[39;00m, base_url\u001b[38;5;241m=\u001b[39mDEFAULT_BASE_URL):\n\u001b[0;32m   2699\u001b[0m \u001b[38;5;250m    \u001b[39m\u001b[38;5;124;03m\"\"\"Clear the bypass value for the scale factor for the network, effectively restoring prior default values.\u001b[39;00m\n\u001b[0;32m   2700\u001b[0m \n\u001b[0;32m   2701\u001b[0m \u001b[38;5;124;03m    Args:\u001b[39;00m\n\u001b[1;32m   (...)\u001b[0m\n\u001b[0;32m   2724\u001b[0m \u001b[38;5;124;03m        clearing this property will throw an exception.\u001b[39;00m\n\u001b[0;32m   2725\u001b[0m \u001b[38;5;124;03m    \"\"\"\u001b[39;00m\n\u001b[1;32m-> 2726\u001b[0m     res \u001b[38;5;241m=\u001b[39m \u001b[43mclear_network_property_bypass\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;124;43m'\u001b[39;49m\u001b[38;5;124;43mNETWORK_SCALE_FACTOR\u001b[39;49m\u001b[38;5;124;43m'\u001b[39;49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mnetwork\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mnetwork\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43mbase_url\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mbase_url\u001b[49m\u001b[43m)\u001b[49m\n\u001b[0;32m   2727\u001b[0m     \u001b[38;5;28;01mreturn\u001b[39;00m res\n",
+      "File \u001b[1;32mA:\\Arbeitsaufgaben\\lang-main\\.venv\\Lib\\site-packages\\py4cytoscape\\py4cytoscape_logger.py:133\u001b[0m, in \u001b[0;36mcy_log.<locals>.wrapper_log\u001b[1;34m(*args, **kwargs)\u001b[0m\n\u001b[0;32m    131\u001b[0m     \u001b[38;5;28;01mreturn\u001b[39;00m log_return(func, value)\n\u001b[0;32m    132\u001b[0m \u001b[38;5;28;01mexcept\u001b[39;00m \u001b[38;5;167;01mException\u001b[39;00m \u001b[38;5;28;01mas\u001b[39;00m e:\n\u001b[1;32m--> 133\u001b[0m     \u001b[43mlog_exception\u001b[49m\u001b[43m(\u001b[49m\u001b[43mfunc\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43me\u001b[49m\u001b[43m)\u001b[49m\n\u001b[0;32m    134\u001b[0m \u001b[38;5;28;01mfinally\u001b[39;00m:\n\u001b[0;32m    135\u001b[0m     log_finally()\n",
+      "File \u001b[1;32mA:\\Arbeitsaufgaben\\lang-main\\.venv\\Lib\\site-packages\\py4cytoscape\\py4cytoscape_logger.py:130\u001b[0m, in \u001b[0;36mcy_log.<locals>.wrapper_log\u001b[1;34m(*args, **kwargs)\u001b[0m\n\u001b[0;32m    128\u001b[0m log_incoming(func, \u001b[38;5;241m*\u001b[39margs, \u001b[38;5;241m*\u001b[39m\u001b[38;5;241m*\u001b[39mkwargs)\n\u001b[0;32m    129\u001b[0m \u001b[38;5;28;01mtry\u001b[39;00m:\n\u001b[1;32m--> 130\u001b[0m     value \u001b[38;5;241m=\u001b[39m \u001b[43mfunc\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[43margs\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[43mkwargs\u001b[49m\u001b[43m)\u001b[49m \u001b[38;5;66;03m# Call function being logged\u001b[39;00m\n\u001b[0;32m    131\u001b[0m     \u001b[38;5;28;01mreturn\u001b[39;00m log_return(func, value)\n\u001b[0;32m    132\u001b[0m \u001b[38;5;28;01mexcept\u001b[39;00m \u001b[38;5;167;01mException\u001b[39;00m \u001b[38;5;28;01mas\u001b[39;00m e:\n",
+      "File \u001b[1;32mA:\\Arbeitsaufgaben\\lang-main\\.venv\\Lib\\site-packages\\py4cytoscape\\style_bypasses.py:516\u001b[0m, in \u001b[0;36mclear_network_property_bypass\u001b[1;34m(visual_property, network, base_url)\u001b[0m\n\u001b[0;32m    512\u001b[0m view_suid \u001b[38;5;241m=\u001b[39m network_views\u001b[38;5;241m.\u001b[39mget_network_views(net_suid, base_url\u001b[38;5;241m=\u001b[39mbase_url)[\u001b[38;5;241m0\u001b[39m]\n\u001b[0;32m    514\u001b[0m visual_property \u001b[38;5;241m=\u001b[39m normalize_prop_name(visual_property)\n\u001b[1;32m--> 516\u001b[0m res \u001b[38;5;241m=\u001b[39m \u001b[43mcommands\u001b[49m\u001b[38;5;241;43m.\u001b[39;49m\u001b[43mcyrest_delete\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;124;43mf\u001b[39;49m\u001b[38;5;124;43m'\u001b[39;49m\u001b[38;5;124;43mnetworks/\u001b[39;49m\u001b[38;5;132;43;01m{\u001b[39;49;00m\u001b[43mnet_suid\u001b[49m\u001b[38;5;132;43;01m}\u001b[39;49;00m\u001b[38;5;124;43m/views/\u001b[39;49m\u001b[38;5;132;43;01m{\u001b[39;49;00m\u001b[43mview_suid\u001b[49m\u001b[38;5;132;43;01m}\u001b[39;49;00m\u001b[38;5;124;43m/network/\u001b[39;49m\u001b[38;5;132;43;01m{\u001b[39;49;00m\u001b[43mvisual_property\u001b[49m\u001b[38;5;132;43;01m}\u001b[39;49;00m\u001b[38;5;124;43m/bypass\u001b[39;49m\u001b[38;5;124;43m'\u001b[39;49m\u001b[43m,\u001b[49m\n\u001b[0;32m    517\u001b[0m \u001b[43m                             \u001b[49m\u001b[43mbase_url\u001b[49m\u001b[38;5;241;43m=\u001b[39;49m\u001b[43mbase_url\u001b[49m\u001b[43m)\u001b[49m\n\u001b[0;32m    518\u001b[0m \u001b[38;5;28;01mreturn\u001b[39;00m res\n",
+      "File \u001b[1;32mA:\\Arbeitsaufgaben\\lang-main\\.venv\\Lib\\site-packages\\py4cytoscape\\py4cytoscape_logger.py:133\u001b[0m, in \u001b[0;36mcy_log.<locals>.wrapper_log\u001b[1;34m(*args, **kwargs)\u001b[0m\n\u001b[0;32m    131\u001b[0m     \u001b[38;5;28;01mreturn\u001b[39;00m log_return(func, value)\n\u001b[0;32m    132\u001b[0m \u001b[38;5;28;01mexcept\u001b[39;00m \u001b[38;5;167;01mException\u001b[39;00m \u001b[38;5;28;01mas\u001b[39;00m e:\n\u001b[1;32m--> 133\u001b[0m     \u001b[43mlog_exception\u001b[49m\u001b[43m(\u001b[49m\u001b[43mfunc\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[43me\u001b[49m\u001b[43m)\u001b[49m\n\u001b[0;32m    134\u001b[0m \u001b[38;5;28;01mfinally\u001b[39;00m:\n\u001b[0;32m    135\u001b[0m     log_finally()\n",
+      "File \u001b[1;32mA:\\Arbeitsaufgaben\\lang-main\\.venv\\Lib\\site-packages\\py4cytoscape\\py4cytoscape_logger.py:130\u001b[0m, in \u001b[0;36mcy_log.<locals>.wrapper_log\u001b[1;34m(*args, **kwargs)\u001b[0m\n\u001b[0;32m    128\u001b[0m log_incoming(func, \u001b[38;5;241m*\u001b[39margs, \u001b[38;5;241m*\u001b[39m\u001b[38;5;241m*\u001b[39mkwargs)\n\u001b[0;32m    129\u001b[0m \u001b[38;5;28;01mtry\u001b[39;00m:\n\u001b[1;32m--> 130\u001b[0m     value \u001b[38;5;241m=\u001b[39m \u001b[43mfunc\u001b[49m\u001b[43m(\u001b[49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[43margs\u001b[49m\u001b[43m,\u001b[49m\u001b[43m \u001b[49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[38;5;241;43m*\u001b[39;49m\u001b[43mkwargs\u001b[49m\u001b[43m)\u001b[49m \u001b[38;5;66;03m# Call function being logged\u001b[39;00m\n\u001b[0;32m    131\u001b[0m     \u001b[38;5;28;01mreturn\u001b[39;00m log_return(func, value)\n\u001b[0;32m    132\u001b[0m \u001b[38;5;28;01mexcept\u001b[39;00m \u001b[38;5;167;01mException\u001b[39;00m \u001b[38;5;28;01mas\u001b[39;00m e:\n",
+      "File \u001b[1;32mA:\\Arbeitsaufgaben\\lang-main\\.venv\\Lib\\site-packages\\py4cytoscape\\commands.py:118\u001b[0m, in \u001b[0;36mcyrest_delete\u001b[1;34m(operation, parameters, base_url, require_json)\u001b[0m\n\u001b[0;32m    116\u001b[0m             \u001b[38;5;28;01mreturn\u001b[39;00m r\u001b[38;5;241m.\u001b[39mtext\n\u001b[0;32m    117\u001b[0m \u001b[38;5;28;01mexcept\u001b[39;00m requests\u001b[38;5;241m.\u001b[39mexceptions\u001b[38;5;241m.\u001b[39mRequestException \u001b[38;5;28;01mas\u001b[39;00m e:\n\u001b[1;32m--> 118\u001b[0m     \u001b[43m_handle_error\u001b[49m\u001b[43m(\u001b[49m\u001b[43me\u001b[49m\u001b[43m)\u001b[49m\n",
+      "File \u001b[1;32mA:\\Arbeitsaufgaben\\lang-main\\.venv\\Lib\\site-packages\\py4cytoscape\\commands.py:683\u001b[0m, in \u001b[0;36m_handle_error\u001b[1;34m(e, force_cy_error)\u001b[0m\n\u001b[0;32m    681\u001b[0m     \u001b[38;5;28;01melse\u001b[39;00m:\n\u001b[0;32m    682\u001b[0m         show_error(\u001b[38;5;124mf\u001b[39m\u001b[38;5;124m'\u001b[39m\u001b[38;5;124mIn \u001b[39m\u001b[38;5;132;01m{\u001b[39;00mcaller\u001b[38;5;132;01m}\u001b[39;00m\u001b[38;5;124m: \u001b[39m\u001b[38;5;132;01m{\u001b[39;00me\u001b[38;5;132;01m}\u001b[39;00m\u001b[38;5;130;01m\\n\u001b[39;00m\u001b[38;5;132;01m{\u001b[39;00mcontent\u001b[38;5;132;01m}\u001b[39;00m\u001b[38;5;124m'\u001b[39m)\n\u001b[1;32m--> 683\u001b[0m \u001b[38;5;28;01mraise\u001b[39;00m e\n",
+      "\u001b[1;31mCyError\u001b[0m: In cyrest_delete(): Bypass Visual Property does not exist: NETWORK_SCALE_FACTOR"
+     ]
+    }
+   ],
+   "source": [
+    "p4c.clear_network_zoom_bypass()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 61,
+   "id": "234855d1-a961-4dd7-9b2e-a96d7acc1142",
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "{}"
+      ]
+     },
+     "execution_count": 61,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "p4c.fit_content()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 62,
+   "id": "79ccddf6-3b0f-4151-a333-05b6e7b5ed8a",
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "1.631300425888794"
+      ]
+     },
+     "execution_count": 62,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "zoom = p4c.get_network_zoom()\n",
+    "zoom"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 63,
+   "id": "dc8f2bcc-9836-4476-bfa4-1d83308375ac",
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "1.5660484088532423"
+      ]
+     },
+     "execution_count": 63,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "zoom * 0.96"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 64,
+   "id": "3e3106c6-d9f4-41cd-8a5a-452cd32b25c0",
+   "metadata": {},
+   "outputs": [
+    {
+     "data": {
+      "text/plain": [
+       "''"
+      ]
+     },
+     "execution_count": 64,
+     "metadata": {},
+     "output_type": "execute_result"
+    }
+   ],
+   "source": [
+    "p4c.set_network_zoom_bypass(zoom * 0.96, bypass=False)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "05a19acc-8af7-45d0-8902-1e9776824a38",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "4647c594-46f1-4e12-9927-e73ca5a0486a",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  },
   {
    "cell_type": "code",
    "execution_count": 10,

pdm.lock

@@ -2,10 +2,13 @@
 # It is not intended for manual editing.
 
 [metadata]
-groups = ["default", "notebooks", "trials", "trails", "dev"]
+groups = ["default", "dev", "notebooks", "trails", "trials"]
-strategy = ["cross_platform", "inherit_metadata"]
+strategy = ["inherit_metadata"]
-lock_version = "4.4.2"
+lock_version = "4.5.0"
-content_hash = "sha256:a9f1cc71f6ee89d2f0572ef7254c9f0be702dbd1a4957b2f0d00d3b83ccc20d4"
+content_hash = "sha256:468a23f2e765abd2cf8760a33a219a4e475f1ebc73630f792eddf6563293720a"
+
+[[metadata.targets]]
+requires_python = ">=3.11"
 
 [[package]]
 name = "annotated-types"
@@ -13,6 +16,9 @@ version = "0.6.0"
 requires_python = ">=3.8"
 summary = "Reusable constraint types to use with typing.Annotated"
 groups = ["default"]
+dependencies = [
+    "typing-extensions>=4.0.0; python_version < \"3.9\"",
+]
 files = [
     {file = "annotated_types-0.6.0-py3-none-any.whl", hash = "sha256:0641064de18ba7a25dee8f96403ebc39113d0cb953a01429249d5c7564666a43"},
     {file = "annotated_types-0.6.0.tar.gz", hash = "sha256:563339e807e53ffd9c267e99fc6d9ea23eb8443c08f112651963e24e22f84a5d"},
@@ -25,8 +31,10 @@ requires_python = ">=3.8"
 summary = "High level compatibility layer for multiple asynchronous event loop implementations"
 groups = ["notebooks"]
 dependencies = [
+    "exceptiongroup>=1.0.2; python_version < \"3.11\"",
     "idna>=2.8",
     "sniffio>=1.1",
+    "typing-extensions>=4.1; python_version < \"3.11\"",
 ]
 files = [
     {file = "anyio-4.3.0-py3-none-any.whl", hash = "sha256:048e05d0f6caeed70d731f3db756d35dcc1f35747c8c403364a8332c630441b8"},
@@ -53,6 +61,7 @@ summary = "Argon2 for Python"
 groups = ["notebooks"]
 dependencies = [
     "argon2-cffi-bindings",
+    "typing-extensions; python_version < \"3.8\"",
 ]
 files = [
     {file = "argon2_cffi-23.1.0-py3-none-any.whl", hash = "sha256:c670642b78ba29641818ab2e68bd4e6a78ba53b7eff7b4c3815ae16abf91c7ea"},
@@ -114,6 +123,7 @@ summary = "Annotate AST trees with source code positions"
 groups = ["notebooks"]
 dependencies = [
     "six>=1.12.0",
+    "typing; python_version < \"3.5\"",
 ]
 files = [
     {file = "asttokens-2.4.1-py2.py3-none-any.whl", hash = "sha256:051ed49c3dcae8913ea7cd08e46a606dba30b79993209636c4875bc1d637bc24"},
@@ -126,6 +136,9 @@ version = "2.0.4"
 requires_python = ">=3.8"
 summary = "Simple LRU cache for asyncio"
 groups = ["notebooks"]
+dependencies = [
+    "typing-extensions>=4.0.0; python_version < \"3.11\"",
+]
 files = [
     {file = "async-lru-2.0.4.tar.gz", hash = "sha256:b8a59a5df60805ff63220b2a0c5b5393da5521b113cd5465a44eb037d81a5627"},
     {file = "async_lru-2.0.4-py3-none-any.whl", hash = "sha256:ff02944ce3c288c5be660c42dbcca0742b32c3b279d6dceda655190240b99224"},
@@ -137,6 +150,9 @@ version = "23.2.0"
 requires_python = ">=3.7"
 summary = "Classes Without Boilerplate"
 groups = ["notebooks"]
+dependencies = [
+    "importlib-metadata; python_version < \"3.8\"",
+]
 files = [
     {file = "attrs-23.2.0-py3-none-any.whl", hash = "sha256:99b87a485a5820b23b879f04c2305b44b951b502fd64be915879d77a7e8fc6f1"},
     {file = "attrs-23.2.0.tar.gz", hash = "sha256:935dc3b529c262f6cf76e50877d35a4bd3c1de194fd41f47a2b7ae8f19971f30"},
@@ -148,6 +164,9 @@ version = "2.15.0"
 requires_python = ">=3.8"
 summary = "Internationalization utilities"
 groups = ["notebooks"]
+dependencies = [
+    "pytz>=2015.7; python_version < \"3.9\"",
+]
 files = [
     {file = "Babel-2.15.0-py3-none-any.whl", hash = "sha256:08706bdad8d0a3413266ab61bd6c34d0c28d6e1e7badf40a2cebe67644e2e1fb"},
     {file = "babel-2.15.0.tar.gz", hash = "sha256:8daf0e265d05768bc6c7a314cf1321e9a123afc328cc635c18622a2f30a04413"},
@@ -210,6 +229,7 @@ version = "0.7.11"
 summary = "The Blis BLAS-like linear algebra library, as a self-contained C-extension."
 groups = ["default"]
 dependencies = [
+    "numpy>=1.15.0; python_version < \"3.9\"",
     "numpy>=1.19.0; python_version >= \"3.9\"",
 ]
 files = [
@@ -232,6 +252,10 @@ version = "2.0.10"
 requires_python = ">=3.6"
 summary = "Super lightweight function registries for your library"
 groups = ["default"]
+dependencies = [
+    "typing-extensions>=3.6.4; python_version < \"3.8\"",
+    "zipp>=0.5; python_version < \"3.8\"",
+]
 files = [
     {file = "catalogue-2.0.10-py3-none-any.whl", hash = "sha256:58c2de0020aa90f4a2da7dfad161bf7b3b054c86a5f09fcedc0b2b740c109a9f"},
     {file = "catalogue-2.0.10.tar.gz", hash = "sha256:4f56daa940913d3f09d589c191c74e5a6d51762b3a9e37dd53b7437afd6cda15"},
@@ -342,6 +366,7 @@ summary = "Composable command line interface toolkit"
 groups = ["default"]
 dependencies = [
     "colorama; platform_system == \"Windows\"",
+    "importlib-metadata; python_version < \"3.8\"",
 ]
 files = [
     {file = "click-8.1.7-py3-none-any.whl", hash = "sha256:ae74fb96c20a0277a1d615f1e4d73c8414f5a98db8b799a7931d1582f3390c28"},
@@ -354,6 +379,10 @@ version = "0.16.0"
 requires_python = ">=3.7"
 summary = "pathlib-style classes for cloud storage services."
 groups = ["default"]
+dependencies = [
+    "importlib-metadata; python_version < \"3.8\"",
+    "typing-extensions>4; python_version < \"3.11\"",
+]
 files = [
     {file = "cloudpathlib-0.16.0-py3-none-any.whl", hash = "sha256:f46267556bf91f03db52b5df7a152548596a15aabca1c8731ef32b0b25a1a6a3"},
     {file = "cloudpathlib-0.16.0.tar.gz", hash = "sha256:cdfcd35d46d529587d744154a0bdf962aca953b725c8784cd2ec478354ea63a3"},
@@ -417,6 +446,7 @@ groups = ["default"]
 dependencies = [
     "pydantic!=1.8,!=1.8.1,<3.0.0,>=1.7.4",
     "srsly<3.0.0,>=2.4.0",
+    "typing-extensions<4.5.0,>=3.7.4.1; python_version < \"3.8\"",
 ]
 files = [
     {file = "confection-0.1.4-py3-none-any.whl", hash = "sha256:a658818d004939069c3e2b3db74a2cb9d956a5e61a1c9ad61788e0ee09a7090f"},
@@ -578,6 +608,17 @@ files = [
     {file = "defusedxml-0.7.1.tar.gz", hash = "sha256:1bb3032db185915b62d7c6209c5a8792be6a32ab2fedacc84e01b52c51aa3e69"},
 ]
 
+[[package]]
+name = "et-xmlfile"
+version = "1.1.0"
+requires_python = ">=3.6"
+summary = "An implementation of lxml.xmlfile for the standard library"
+groups = ["dev"]
+files = [
+    {file = "et_xmlfile-1.1.0-py3-none-any.whl", hash = "sha256:a2ba85d1d6a74ef63837eed693bcb89c3f752169b0e3e7ae5b16ca5e1b3deada"},
+    {file = "et_xmlfile-1.1.0.tar.gz", hash = "sha256:8eb9e2bc2f8c97e37a2dc85a09ecdcdec9d8a396530a6d5a33b30b9a92da0c5c"},
+]
+
 [[package]]
 name = "executing"
 version = "2.0.1"
@@ -621,6 +662,7 @@ dependencies = [
     "Werkzeug>=3.0.0",
     "blinker>=1.6.2",
     "click>=8.1.3",
+    "importlib-metadata>=3.6.0; python_version < \"3.10\"",
     "itsdangerous>=2.1.2",
 ]
 files = [
@@ -634,6 +676,9 @@ version = "1.5.1"
 requires_python = ">=2.7, !=3.0, !=3.1, !=3.2, !=3.3, !=3.4, <4"
 summary = "Validates fully-qualified domain names against RFC 1123, so that they are acceptable to modern bowsers"
 groups = ["notebooks"]
+dependencies = [
+    "cached-property>=1.3.0; python_version < \"3.8\"",
+]
 files = [
     {file = "fqdn-1.5.1-py3-none-any.whl", hash = "sha256:3a179af3761e4df6eb2e026ff9e1a3033d3587bf980a0b1b2e1e5d08d7358014"},
     {file = "fqdn-1.5.1.tar.gz", hash = "sha256:105ed3677e767fb5ca086a0c1f4bb66ebc3c100be518f0e0d755d9eae164d89f"},
@@ -656,6 +701,9 @@ version = "0.14.0"
 requires_python = ">=3.7"
 summary = "A pure-Python, bring-your-own-I/O implementation of HTTP/1.1"
 groups = ["notebooks"]
+dependencies = [
+    "typing-extensions; python_version < \"3.8\"",
+]
 files = [
     {file = "h11-0.14.0-py3-none-any.whl", hash = "sha256:e3fe4ac4b851c468cc8363d500db52c2ead036020723024a109d37346efaa761"},
     {file = "h11-0.14.0.tar.gz", hash = "sha256:8f19fbbe99e72420ff35c00b27a34cb9937e902a8b810e2c88300c6f0a3b699d"},
@@ -773,6 +821,7 @@ requires_python = ">=3.8"
 summary = "Read metadata from Python packages"
 groups = ["default"]
 dependencies = [
+    "typing-extensions>=3.6.4; python_version < \"3.8\"",
     "zipp>=0.5",
 ]
 files = [
@@ -829,6 +878,7 @@ groups = ["notebooks"]
 dependencies = [
     "colorama; sys_platform == \"win32\"",
     "decorator",
+    "exceptiongroup; python_version < \"3.11\"",
     "jedi>=0.16",
     "matplotlib-inline",
     "pexpect>4.3; sys_platform != \"win32\" and sys_platform != \"emscripten\"",
@@ -955,7 +1005,9 @@ summary = "An implementation of JSON Schema validation for Python"
 groups = ["notebooks"]
 dependencies = [
     "attrs>=22.2.0",
+    "importlib-resources>=1.4.0; python_version < \"3.9\"",
     "jsonschema-specifications>=2023.03.6",
+    "pkgutil-resolve-name>=1.3.10; python_version < \"3.9\"",
     "referencing>=0.28.4",
     "rpds-py>=0.7.1",
 ]
@@ -971,6 +1023,7 @@ requires_python = ">=3.8"
 summary = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry"
 groups = ["notebooks"]
 dependencies = [
+    "importlib-resources>=1.4.0; python_version < \"3.9\"",
     "referencing>=0.31.0",
 ]
 files = [
@@ -1008,6 +1061,7 @@ requires_python = ">=3.8"
 summary = "Jupyter protocol implementation and client libraries"
 groups = ["notebooks"]
 dependencies = [
+    "importlib-metadata>=4.8.3; python_version < \"3.10\"",
     "jupyter-core!=5.0.*,>=4.12",
     "python-dateutil>=2.8.2",
     "pyzmq>=23.0",
@@ -1062,6 +1116,7 @@ requires_python = ">=3.8"
 summary = "Multi-Language Server WebSocket proxy for Jupyter Notebook/Lab server"
 groups = ["notebooks"]
 dependencies = [
+    "importlib-metadata>=4.8.3; python_version < \"3.10\"",
     "jupyter-server>=1.1.2",
 ]
 files = [
@@ -1125,6 +1180,8 @@ groups = ["notebooks"]
 dependencies = [
     "async-lru>=1.0.0",
     "httpx>=0.25.0",
+    "importlib-metadata>=4.8.3; python_version < \"3.10\"",
+    "importlib-resources>=1.4; python_version < \"3.9\"",
     "ipykernel>=6.5.0",
     "jinja2>=3.0.3",
     "jupyter-core",
@@ -1134,6 +1191,7 @@ dependencies = [
     "notebook-shim>=0.2",
     "packaging",
     "setuptools>=40.1.0",
+    "tomli>=1.2.2; python_version < \"3.11\"",
     "tornado>=6.2.0",
     "traitlets",
 ]
@@ -1161,6 +1219,7 @@ summary = "A set of server components for JupyterLab and JupyterLab like applica
 groups = ["notebooks"]
 dependencies = [
     "babel>=2.10",
+    "importlib-metadata>=4.8.3; python_version < \"3.10\"",
     "jinja2>=3.0.3",
     "json5>=0.9.0",
     "jsonschema>=4.18.0",
@@ -1184,6 +1243,23 @@ files = [
     {file = "jupyterlab_widgets-3.0.11.tar.gz", hash = "sha256:dd5ac679593c969af29c9bed054c24f26842baa51352114736756bc035deee27"},
 ]
 
+[[package]]
+name = "kaleido"
+version = "0.2.1"
+summary = "Static image export for web-based visualization libraries with zero dependencies"
+groups = ["default"]
+dependencies = [
+    "pathlib; python_version < \"3.4\"",
+]
+files = [
+    {file = "kaleido-0.2.1-py2.py3-none-macosx_10_11_x86_64.whl", hash = "sha256:ca6f73e7ff00aaebf2843f73f1d3bacde1930ef5041093fe76b83a15785049a7"},
+    {file = "kaleido-0.2.1-py2.py3-none-macosx_11_0_arm64.whl", hash = "sha256:bb9a5d1f710357d5d432ee240ef6658a6d124c3e610935817b4b42da9c787c05"},
+    {file = "kaleido-0.2.1-py2.py3-none-manylinux1_x86_64.whl", hash = "sha256:aa21cf1bf1c78f8fa50a9f7d45e1003c387bd3d6fe0a767cfbbf344b95bdc3a8"},
+    {file = "kaleido-0.2.1-py2.py3-none-manylinux2014_aarch64.whl", hash = "sha256:845819844c8082c9469d9c17e42621fbf85c2b237ef8a86ec8a8527f98b6512a"},
+    {file = "kaleido-0.2.1-py2.py3-none-win32.whl", hash = "sha256:ecc72635860be616c6b7161807a65c0dbd9b90c6437ac96965831e2e24066552"},
+    {file = "kaleido-0.2.1-py2.py3-none-win_amd64.whl", hash = "sha256:4670985f28913c2d063c5734d125ecc28e40810141bdb0a46f15b76c1d45f23c"},
+]
+
 [[package]]
 name = "langcodes"
 version = "3.4.0"
@@ -1399,6 +1475,7 @@ dependencies = [
     "beautifulsoup4",
     "bleach!=5.0.0",
     "defusedxml",
+    "importlib-metadata>=3.6; python_version < \"3.10\"",
     "jinja2>=3.0",
     "jupyter-core>=4.7",
     "jupyterlab-pygments",
@@ -1653,12 +1730,29 @@ files = [
     {file = "nvidia_nvtx_cu12-12.1.105-py3-none-win_amd64.whl", hash = "sha256:65f4d98982b31b60026e0e6de73fbdfc09d08a96f4656dd3665ca616a11e1e82"},
 ]
 
+[[package]]
+name = "openpyxl"
+version = "3.1.5"
+requires_python = ">=3.8"
+summary = "A Python library to read/write Excel 2010 xlsx/xlsm files"
+groups = ["dev"]
+dependencies = [
+    "et-xmlfile",
+]
+files = [
+    {file = "openpyxl-3.1.5-py2.py3-none-any.whl", hash = "sha256:5282c12b107bffeef825f4617dc029afaf41d0ea60823bbb665ef3079dc79de2"},
+    {file = "openpyxl-3.1.5.tar.gz", hash = "sha256:cf0e3cf56142039133628b5acffe8ef0c12bc902d2aadd3e0fe5878dc08d1050"},
+]
+
 [[package]]
 name = "overrides"
 version = "7.7.0"
 requires_python = ">=3.6"
 summary = "A decorator to automatically detect mismatch when overriding a method."
 groups = ["notebooks"]
+dependencies = [
+    "typing; python_version < \"3.5\"",
+]
 files = [
     {file = "overrides-7.7.0-py3-none-any.whl", hash = "sha256:c7ed9d062f78b8e4c1a7b70bd8796b35ead4d9f510227ef9c5dc7626c60d7e49"},
     {file = "overrides-7.7.0.tar.gz", hash = "sha256:55158fa3d93b98cc75299b1e67078ad9003ca27945c76162c1c0766d6f91820a"},
@@ -1682,6 +1776,7 @@ requires_python = ">=3.9"
 summary = "Powerful data structures for data analysis, time series, and statistics"
 groups = ["default"]
 dependencies = [
+    "numpy>=1.22.4; python_version < \"3.11\"",
     "numpy>=1.23.2; python_version == \"3.11\"",
     "numpy>=1.26.0; python_version >= \"3.12\"",
     "python-dateutil>=2.8.2",
@@ -2562,6 +2657,7 @@ dependencies = [
     "jinja2",
     "langcodes<4.0.0,>=3.2.0",
     "murmurhash<1.1.0,>=0.28.0",
+    "numpy>=1.15.0; python_version < \"3.9\"",
     "numpy>=1.19.0; python_version >= \"3.9\"",
     "packaging>=20.0",
     "preshed<3.1.0,>=3.0.2",
@@ -2654,6 +2750,8 @@ requires_python = ">=3.7"
 summary = "spaCy pipelines for pre-trained BERT and other transformers"
 groups = ["default"]
 dependencies = [
+    "dataclasses<1.0,>=0.6; python_version < \"3.7\"",
+    "numpy>=1.15.0; python_version < \"3.9\"",
     "numpy>=1.19.0; python_version >= \"3.9\"",
     "spacy-alignments<1.0.0,>=0.7.2",
     "spacy<4.1.0,>=3.5.0",
@@ -2812,14 +2910,18 @@ dependencies = [
     "blis<0.8.0,>=0.7.8",
     "catalogue<2.1.0,>=2.0.4",
     "confection<1.0.0,>=0.0.1",
+    "contextvars<3,>=2.4; python_version < \"3.7\"",
     "cymem<2.1.0,>=2.0.2",
+    "dataclasses<1.0,>=0.6; python_version < \"3.7\"",
     "murmurhash<1.1.0,>=1.0.2",
+    "numpy>=1.15.0; python_version < \"3.9\"",
     "numpy>=1.19.0; python_version >= \"3.9\"",
     "packaging>=20.0",
     "preshed<3.1.0,>=3.0.2",
     "pydantic!=1.8,!=1.8.1,<3.0.0,>=1.7.4",
     "setuptools",
     "srsly<3.0.0,>=2.4.0",
+    "typing-extensions<4.5.0,>=3.7.4.1; python_version < \"3.8\"",
     "wasabi<1.2.0,>=0.8.1",
 ]
 files = [
@@ -3133,6 +3235,7 @@ summary = "A lightweight console printing and formatting toolkit"
 groups = ["default"]
 dependencies = [
     "colorama>=0.4.6; sys_platform == \"win32\" and python_version >= \"3.7\"",
+    "typing-extensions<4.5.0,>=3.7.4.1; python_version < \"3.8\"",
 ]
 files = [
     {file = "wasabi-1.1.2-py3-none-any.whl", hash = "sha256:0a3f933c4bf0ed3f93071132c1b87549733256d6c8de6473c5f7ed2e171b5cf9"},
@@ -3144,6 +3247,9 @@ name = "wcwidth"
 version = "0.2.13"
 summary = "Measures the displayed width of unicode strings in a terminal"
 groups = ["notebooks"]
+dependencies = [
+    "backports-functools-lru-cache>=1.2.1; python_version < \"3.2\"",
+]
 files = [
     {file = "wcwidth-0.2.13-py2.py3-none-any.whl", hash = "sha256:3da69048e4540d84af32131829ff948f1e022c1c6bdb8d6102117aac784f6859"},
     {file = "wcwidth-0.2.13.tar.gz", hash = "sha256:72ea0c06399eb286d978fdedb6923a9eb47e1c486ce63e9b4e64fc18303972b5"},

pyproject.toml

@@ -17,6 +17,7 @@ dependencies = [
     "dash>=2.17.0",
     "dash-cytoscape>=1.0.1",
     "py4cytoscape>=1.9.0",
+    "kaleido==0.2.1",
 ]
 requires-python = ">=3.11"
 readme = "README.md"
@@ -44,6 +45,7 @@ trials = [
 ]
 dev = [
     "cython>=3.0.10",
+    "openpyxl>=3.1.5",
 ]
 
 [tool.ruff]

scripts/dash_timeline_static.py

@@ -3,11 +3,11 @@ import webbrowser
 from collections.abc import Collection, Iterable
 from threading import Thread
 from typing import Any, Final, cast
-
+from pathlib import Path
-import pandas as pd
 
 # import dash_cytoscape as cyto
 import plotly.express as px
+import plotly.io
 from dash import (
     Dash,
     Input,
@@ -22,16 +22,17 @@ from pandas import DataFrame
 from plotly.graph_objects import Figure
 
 import lang_main.io
+from lang_main import model_loader as m_load
 from lang_main.analysis import graphs, tokens
 from lang_main.analysis.timeline import (
     calc_delta_to_next_failure,
     filter_timeline_cands,
 )
 from lang_main.constants import (
+    MODEL_LOADER_MAP,
     NAME_DELTA_FEAT_TO_NEXT_FAILURE,
     NAME_DELTA_FEAT_TO_REPAIR,
     SAVE_PATH_FOLDER,
-    SPCY_MODEL,
 )
 from lang_main.errors import EmptyEdgesError, EmptyGraphError
 from lang_main.pipelines.predefined import (
@@ -43,10 +44,16 @@ from lang_main.types import (
     EntryPoints,
     HTMLColumns,
     HTMLTable,
+    LanguageModels,
     ObjectID,
     TimelineCandidates,
 )
 
+# ** model
+SPACY_MODEL = m_load.instantiate_model(
+    model_load_map=MODEL_LOADER_MAP,
+    model=LanguageModels.SPACY,
+)
 # ** data
 # p_df = Path(r'../results/test_20240619/TIMELINE.pkl').resolve()
 p_df = lang_main.io.get_entry_point(SAVE_PATH_FOLDER, EntryPoints.TIMELINE_POST)
@@ -62,17 +69,42 @@ rescaling_pipe = build_tk_graph_rescaling_pipe(
     exit_point=EntryPoints.TIMELINE_TK_GRAPH_RESCALED,
     save_result=False,
 )
-BASE_NETWORK_NAME: Final[str] = 'test_timeline'
+BASE_NETWORK_NAME: Final[str] = 'timeline_candidates'
 # RENDER_FOLDER: Final[Path] = Path.cwd() / 'assets/'
 graph_render_pipe = build_tk_graph_render_pipe(
     with_subgraphs=False,
     base_network_name=BASE_NETWORK_NAME,
 )
 # PTH_RENDERED_GRAPH = f'assets/{BASE_NETWORK_NAME}.svg'
+PTH_RENDERED_TIMELINE = lang_main.io.get_entry_point(
+    SAVE_PATH_FOLDER,
+    'chart_timeline',
+    file_ext='.svg',
+    check_existence=False,
+)
+PTH_TABLE_TIMELINE = lang_main.io.get_entry_point(
+    SAVE_PATH_FOLDER,
+    'table_timeline',
+    file_ext='.xlsx',
+    check_existence=False,
+)
+PTH_RENDERED_DELTA_REPAIR = lang_main.io.get_entry_point(
+    SAVE_PATH_FOLDER,
+    'chart_delta_repair',
+    file_ext='.svg',
+    check_existence=False,
+)
+PTH_TABLE_DELTA_REPAIR = lang_main.io.get_entry_point(
+    SAVE_PATH_FOLDER,
+    'table_delta_repair',
+    file_ext='.xlsx',
+    check_existence=False,
+)
 PTH_RENDERED_GRAPH = lang_main.io.get_entry_point(
     SAVE_PATH_FOLDER,
     BASE_NETWORK_NAME,
     file_ext='.svg',
+    check_existence=False,
 )
 
 # NAME_DELTA_FEAT_TO_NEXT_FAILURE: Final[str] = 'Zeitspanne bis zum nächsten Ereignis [Tage]'
@@ -168,7 +200,7 @@ graph_layout = html.Div(
                                 id='static-graph-img',
                                 alt='static rendered graph',
                                 style={
-                                    'width': 'auto',
+                                    'width': '900px',
                                     'height': 'auto',
                                 },
                             ),
@@ -212,7 +244,27 @@ app.layout = html.Div(
             children=[
                 html.H3(id='object-text'),
                 dcc.Dropdown(id='selector-candidates'),
+                html.Button(
+                    'Download Diagramm',
+                    id='bt-dl-timeline',
+                    style={
+                        'marginLeft': 'auto',
+                        'width': '300px',
+                        'marginTop': '1em',
+                    },
+                ),
+                dcc.Download(id='dl-timeline'),
                 dcc.Graph(id='figure-occurrences'),
+                html.Button(
+                    'Download Diagramm',
+                    id='bt-dl-deltarepair',
+                    style={
+                        'marginLeft': 'auto',
+                        'width': '300px',
+                        'marginTop': '1em',
+                    },
+                ),
+                dcc.Download(id='dl-deltarepair'),
                 dcc.Graph(id='figure-delta'),
             ]
         ),
@@ -221,6 +273,16 @@ app.layout = html.Div(
                 html.Div(
                     [
                         html.H5('Überblick ähnlicher Vorgänge'),
+                        dcc.Download(id='dl-table-timeline'),
+                        html.Button(
+                            'Download Table',
+                            id='bt-table-timeline',
+                            style={
+                                'marginLeft': 'auto',
+                                'width': '300px',
+                                'marginTop': '1em',
+                            },
+                        ),
                         dash_table.DataTable(id='table-candidates'),
                     ],
                     style={'paddingBottom': '1em'},
@@ -233,6 +295,16 @@ app.layout = html.Div(
                                 'bis zum nächsten Ereignis'
                             )
                         ),
+                        dcc.Download(id='dl-table-deltarepair'),
+                        html.Button(
+                            'Download Table',
+                            id='bt-table-deltarepair',
+                            style={
+                                'marginLeft': 'auto',
+                                'width': '300px',
+                                'marginTop': '1em',
+                            },
+                        ),
                         dash_table.DataTable(id='table-best-actions'),
                     ]
                 ),
@@ -368,6 +440,7 @@ def transform_to_HTML_table(
     date_cols: Iterable[str] | None = None,
     sorting_feature: str | None = None,
     sorting_ascending: bool = True,
+    save_path: Path | None = None,
 ) -> tuple[HTMLColumns, HTMLTable]:
     target_features = list(target_features)
     data = data.copy()
@@ -383,6 +456,9 @@ def transform_to_HTML_table(
     columns = [{'name': col, 'id': col} for col in data.columns]
     table_data = data.to_dict('records')
 
+    if save_path is not None:
+        data.to_excel(save_path)
+
     return columns, table_data
 
 
@@ -410,6 +486,7 @@ def update_tables_candidates(
         date_cols=TABLE_FEATS_DATES,
         sorting_feature='ErstellungsDatum',
         sorting_ascending=True,
+        save_path=PTH_TABLE_TIMELINE,
     )
     # df = df.filter(items=TABLE_FEATS_OVERVIEW, axis=1).sort_values(
     #     by='ErstellungsDatum', ascending=True
@@ -430,6 +507,7 @@ def update_tables_candidates(
         data=cands_best_actions,
         target_features=TABLE_FEATS_BEST_ACTIONS,
         date_cols=TABLE_FEATS_DATES,
+        save_path=PTH_TABLE_DELTA_REPAIR,
     )
 
     return overview_cols, overview_table, best_actions_cols, best_actions_table
@@ -457,7 +535,7 @@ def display_candidates_as_graph(index, obj_id):
     t1 = time.perf_counter()
     tk_graph_cands, _ = tokens.build_token_graph(
         data=df,
-        model=SPCY_MODEL,
+        model=SPACY_MODEL,
         target_feature='VorgangsBeschreibung',
         build_map=False,
         logging_graph=False,
@@ -496,10 +574,58 @@ def display_candidates_as_graph(index, obj_id):
     Input('bt-reset', 'n_clicks'),
     prevent_initial_call=True,
 )
-def func(n_clicks):
+def download_graph(_):
     return dcc.send_file(path=PTH_RENDERED_GRAPH)
 
 
+@callback(
+    Output('dl-timeline', 'data'),
+    Input('bt-dl-timeline', 'n_clicks'),
+    State('figure-occurrences', 'figure'),
+    prevent_initial_call=True,
+)
+def download_timeline(_, fig: dict):
+    # add these lines before fig = go.Figure(fig_raw)
+    if 'rangeslider' in fig['layout']['xaxis']:
+        del fig['layout']['xaxis']['rangeslider']['yaxis']
+    figure = Figure(fig)
+    figure.write_image(PTH_RENDERED_TIMELINE)
+    return dcc.send_file(path=PTH_RENDERED_TIMELINE)
+
+
+@callback(
+    Output('dl-deltarepair', 'data'),
+    Input('bt-dl-deltarepair', 'n_clicks'),
+    State('figure-delta', 'figure'),
+    prevent_initial_call=True,
+)
+def download_delta_repair(_, fig: dict):
+    # add these lines before fig = go.Figure(fig_raw)
+    if 'rangeslider' in fig['layout']['xaxis']:
+        del fig['layout']['xaxis']['rangeslider']['yaxis']
+    figure = Figure(fig)
+    figure.write_image(PTH_RENDERED_DELTA_REPAIR)
+    return dcc.send_file(path=PTH_RENDERED_DELTA_REPAIR)
+
+
+@callback(
+    Output('dl-table-timeline', 'data'),
+    Input('bt-table-timeline', 'n_clicks'),
+    prevent_initial_call=True,
+)
+def download_table_timeline(_):
+    return dcc.send_file(path=PTH_TABLE_TIMELINE)
+
+
+@callback(
+    Output('dl-table-deltarepair', 'data'),
+    Input('bt-table-deltarepair', 'n_clicks'),
+    prevent_initial_call=True,
+)
+def download_table_delta_repair(_):
+    return dcc.send_file(path=PTH_TABLE_DELTA_REPAIR)
+
+
 def _start_webbrowser():
     host = '127.0.0.1'
     port = '8050'

scripts/lang_main_config.toml

@@ -2,8 +2,10 @@
 
 [paths]
 inputs = './inputs/'
-results = './results/test_20240619/'
+results = './results/dummy_N_1000/'
-dataset = '../data/02_202307/Export4.csv'
+dataset = '../data/Dummy_Dataset_N_1000.csv'
+# results = './results/test_20240807/'
+# dataset = '../data/02_202307/Export4.csv'
 #results = './results/Export7/'
 #dataset = './01_03_Rohdaten_202403/Export7_59499_Zeilen.csv'
 #results = './results/Export7_trunc/'
@@ -12,12 +14,12 @@ dataset = '../data/02_202307/Export4.csv'
 # only debugging features, production-ready pipelines should always
 # be fully executed
 [control]
-preprocessing_skip = true
+preprocessing_skip = false
-token_analysis_skip = true
+token_analysis_skip = false
-graph_postprocessing_skip = true
+graph_postprocessing_skip = false
-graph_rescaling_skip = true
+graph_rescaling_skip = false
 graph_static_rendering_skip = false
-time_analysis_skip = true
+time_analysis_skip = false
 
 #[export_filenames]
 #filename_cossim_filter_candidates = 'CosSim-FilterCandidates'
@@ -34,7 +36,7 @@ threshold_amount_characters = 5
 threshold_similarity = 0.8
 
 [graph_postprocessing]
-threshold_edge_weight = 150
+threshold_edge_weight = 1
 
 [time_analysis.uniqueness]
 threshold_unique_texts = 4

src/lang_main/__init__.py

@@ -18,7 +18,7 @@ p4c.py4cytoscape_logger.detail_logger.addHandler(logging.NullHandler())
 
 # ** lang-main config
 logging.Formatter.converter = gmtime
-LOG_FMT: Final[str] = '%(asctime)s | %(module)s:%(levelname)s | %(message)s'
+LOG_FMT: Final[str] = '%(asctime)s | lang_main:%(module)s:%(levelname)s | %(message)s'
 LOG_DATE_FMT: Final[str] = '%Y-%m-%d %H:%M:%S +0000'
 logging.basicConfig(
     stream=sys.stdout,

src/lang_main/analysis/preprocessing.py

@@ -70,7 +70,7 @@ def load_raw_data(
         filepath_or_buffer=path,
         sep=';',
         encoding='cp1252',
-        parse_dates=date_cols,
+        parse_dates=list(date_cols),
         dayfirst=True,
     )
     logger.info('Loaded dataset successfully.')
@@ -278,7 +278,8 @@ def merge_similarity_dupl(
     return (merged_data,)
 
 
-#####################################################################
+# ** #################################################################################
+# TODO check removal
 def build_embedding_map(
     data: Series,
     model: GermanSpacyModel | SentenceTransformer,

src/lang_main/analysis/timeline.py

@@ -8,10 +8,13 @@ from tqdm.auto import tqdm  # TODO: check deletion
 from lang_main.analysis.shared import (
     candidates_by_index,
     entry_wise_cleansing,
-    pattern_escape_seq_sentences,
     similar_index_connection_graph,
     similar_index_groups,
 )
+from lang_main.constants import (
+    NAME_DELTA_FEAT_TO_NEXT_FAILURE,
+    NAME_DELTA_FEAT_TO_REPAIR,
+)
 from lang_main.loggers import logger_timeline as logger
 from lang_main.types import (
     DataFrameTLFiltered,
@@ -94,7 +97,7 @@ def calc_delta_to_repair(
     data: DataFrame,
     date_feature_start: str = 'ErstellungsDatum',
     date_feature_end: str = 'ErledigungsDatum',
-    name_delta_feature: str = 'delta_to_repair',
+    name_delta_feature: str = NAME_DELTA_FEAT_TO_REPAIR,
     convert_to_days: bool = True,
 ) -> tuple[DataFrame]:
     logger.info('Calculating time differences between start and end of operations...')
@@ -316,7 +319,7 @@ def filter_timeline_cands(
 def calc_delta_to_next_failure(
     data: DataFrameTLFiltered,
     date_feature: str = 'ErstellungsDatum',
-    name_delta_feature: str = 'delta_to_next_failure',
+    name_delta_feature: str = NAME_DELTA_FEAT_TO_NEXT_FAILURE,
     convert_to_days: bool = True,
 ) -> DataFrameTLFiltered:
     data = data.copy()

src/lang_main/analysis/tokens.py

@@ -5,9 +5,6 @@ from typing import Literal, cast, overload
 
 from dateutil.parser import parse
 from pandas import DataFrame
-from spacy.language import Language as GermanSpacyModel
-from spacy.tokens.doc import Doc as SpacyDoc
-from spacy.tokens.token import Token as SpacyToken
 from tqdm.auto import tqdm
 
 from lang_main.analysis.graphs import (
@@ -15,7 +12,12 @@ from lang_main.analysis.graphs import (
     update_graph,
 )
 from lang_main.loggers import logger_token_analysis as logger
-from lang_main.types import PandasIndex
+from lang_main.types import (
+    PandasIndex,
+    SpacyDoc,
+    SpacyModel,
+    SpacyToken,
+)
 
 # ** POS
 # POS_OF_INTEREST: frozenset[str] = frozenset(['NOUN', 'PROPN', 'ADJ', 'VERB', 'AUX'])
@@ -147,7 +149,7 @@ def add_doc_info_to_graph(
 @overload
 def build_token_graph(
     data: DataFrame,
-    model: GermanSpacyModel,
+    model: SpacyModel,
     *,
     target_feature: str = ...,
     weights_feature: str | None = ...,
@@ -161,7 +163,7 @@ def build_token_graph(
 @overload
 def build_token_graph(
     data: DataFrame,
-    model: GermanSpacyModel,
+    model: SpacyModel,
     *,
     target_feature: str = ...,
     weights_feature: str | None = ...,
@@ -174,7 +176,7 @@ def build_token_graph(
 
 def build_token_graph(
     data: DataFrame,
-    model: GermanSpacyModel,
+    model: SpacyModel,
     *,
     target_feature: str = 'entry',
     weights_feature: str | None = None,
@@ -233,7 +235,7 @@ def build_token_graph(
 
 def build_token_graph_simple(
     data: DataFrame,
-    model: GermanSpacyModel,
+    model: SpacyModel,
 ) -> tuple[TokenGraph, dict[PandasIndex, SpacyDoc]]:
     graph = TokenGraph()
     model_input = cast(tuple[str], tuple(data['entry'].to_list()))
@@ -264,7 +266,7 @@ def build_token_graph_simple(
 
 def build_token_graph_old(
     data: DataFrame,
-    model: GermanSpacyModel,
+    model: SpacyModel,
 ) -> tuple[TokenGraph]:
     # empty NetworkX directed graph
     # graph = nx.DiGraph()

src/lang_main/constants.py

@@ -1,12 +1,19 @@
 from pathlib import Path
 from typing import Final
 
-import spacy
+# TODO check removal
-from sentence_transformers import SentenceTransformer
+# import spacy
-from spacy.language import Language as GermanSpacyModel
+# from sentence_transformers import SentenceTransformer
-
+# from spacy.language import Language as GermanSpacyModel
 from lang_main import CONFIG, CYTO_PATH_STYLESHEET
-from lang_main.types import CytoLayoutProperties, CytoLayouts, STFRDeviceTypes
+from lang_main import model_loader as m_load
+from lang_main.types import (
+    CytoLayoutProperties,
+    CytoLayouts,
+    LanguageModels,
+    ModelLoaderMap,
+    STFRDeviceTypes,
+)
 
 __all__ = [
     'CONFIG',
@@ -38,14 +45,33 @@ SKIP_TIME_ANALYSIS: Final[bool] = CONFIG['control']['time_analysis_skip']
 
 
 # ** models
-# ** sentence_transformers
+# ** loading
+SPACY_MODEL_NAME: Final[str] = 'de_dep_news_trf'
+STFR_MODEL_NAME: Final[str] = 'sentence-transformers/all-mpnet-base-v2'
 STFR_DEVICE: Final[STFRDeviceTypes] = STFRDeviceTypes.CPU
-STFR_MODEL: Final[SentenceTransformer] = SentenceTransformer(
+MODEL_LOADER_MAP: Final[ModelLoaderMap] = {
-    'sentence-transformers/all-mpnet-base-v2', device=STFR_DEVICE
+    LanguageModels.SENTENCE_TRANSFORMER: {
-)
+        'func': m_load.load_sentence_transformer,
+        'kwargs': {
+            'model_name': STFR_MODEL_NAME,
+            'device': STFR_DEVICE,
+        },
+    },
+    LanguageModels.SPACY: {
+        'func': m_load.load_spacy,
+        'kwargs': {
+            'model_name': SPACY_MODEL_NAME,
+        },
+    },
+}
+# ** sentence_transformers
+
+# STFR_MODEL: Final[SentenceTransformer] = SentenceTransformer(
+#     'sentence-transformers/all-mpnet-base-v2', device=STFR_DEVICE
+# )
 
 # ** spacy
-SPCY_MODEL: Final[GermanSpacyModel] = spacy.load('de_dep_news_trf')
+# SPCY_MODEL: Final[GermanSpacyModel] = spacy.load('de_dep_news_trf')
 
 # ** export
 # ** preprocessing
@@ -82,6 +108,7 @@ CYTO_STYLESHEET_NAME: Final[str] = 'lang_main'
 CYTO_SELECTION_PROPERTY: Final[str] = 'node_selection'
 CYTO_NUMBER_SUBGRAPHS: Final[int] = 5
 CYTO_ITER_NEIGHBOUR_DEPTH: Final[int] = 2
+CYTO_NETWORK_ZOOM_FACTOR: Final[float] = 0.96
 
 # ** time_analysis.uniqueness
 THRESHOLD_UNIQUE_TEXTS: Final[int] = CONFIG['time_analysis']['uniqueness'][

src/lang_main/io.py

@@ -93,9 +93,10 @@ def get_entry_point(
     saving_path: Path,
     filename: str,
     file_ext: str = '.pkl',
+    check_existence: bool = True,
 ) -> Path:
     entry_point_path = (saving_path / filename).with_suffix(file_ext)
-    if not entry_point_path.exists():
+    if check_existence and not entry_point_path.exists():
         raise FileNotFoundError(
             f'Could not find provided entry data under path: >>{entry_point_path}<<'
         )

src/lang_main/model_loader.py

@@ -0,0 +1,53 @@
+from __future__ import annotations
+
+from typing import Literal, overload
+
+import spacy
+from sentence_transformers import SentenceTransformer
+
+from lang_main.types import (
+    LanguageModels,
+    Model,
+    ModelLoaderMap,
+    SpacyModel,
+    STFRDeviceTypes,
+)
+
+
+@overload
+def instantiate_model(
+    model_load_map: ModelLoaderMap,
+    model: Literal[LanguageModels.SENTENCE_TRANSFORMER],
+) -> SentenceTransformer: ...
+
+
+@overload
+def instantiate_model(
+    model_load_map: ModelLoaderMap,
+    model: Literal[LanguageModels.SPACY],
+) -> SpacyModel: ...
+
+
+def instantiate_model(
+    model_load_map: ModelLoaderMap,
+    model: LanguageModels,
+) -> Model:
+    if model not in model_load_map:
+        raise KeyError(f'Model >>{model}<< not known. Choose from: {model_load_map.keys()}')
+    builder_func = model_load_map[model]['func']
+    func_kwargs = model_load_map[model]['kwargs']
+
+    return builder_func(**func_kwargs)
+
+
+def load_spacy(
+    model_name: str,
+) -> SpacyModel:
+    return spacy.load(model_name)
+
+
+def load_sentence_transformer(
+    model_name: str,
+    device: STFRDeviceTypes,
+) -> SentenceTransformer:
+    return SentenceTransformer(model_name_or_path=model_name, device=device)

src/lang_main/pipelines/predefined.py

@@ -1,5 +1,6 @@
 from pathlib import Path
 
+from lang_main import model_loader as m_load
 from lang_main.analysis import graphs
 from lang_main.analysis.preprocessing import (
     analyse_feature,
@@ -29,10 +30,9 @@ from lang_main.constants import (
     DATE_COLS,
     FEATURE_NAME_OBJ_ID,
     MODEL_INPUT_FEATURES,
+    MODEL_LOADER_MAP,
     NAME_DELTA_FEAT_TO_REPAIR,
     SAVE_PATH_FOLDER,
-    SPCY_MODEL,
-    STFR_MODEL,
     THRESHOLD_AMOUNT_CHARACTERS,
     THRESHOLD_EDGE_WEIGHT,
     THRESHOLD_NUM_ACTIVITIES,
@@ -43,7 +43,18 @@ from lang_main.constants import (
 )
 from lang_main.pipelines.base import Pipeline
 from lang_main.render import cytoscape as cyto
-from lang_main.types import EntryPoints
+from lang_main.types import EntryPoints, LanguageModels
+
+# ** Models
+STFR_MODEL = m_load.instantiate_model(
+    model_load_map=MODEL_LOADER_MAP,
+    model=LanguageModels.SENTENCE_TRANSFORMER,
+)
+
+SPACY_MODEL = m_load.instantiate_model(
+    model_load_map=MODEL_LOADER_MAP,
+    model=LanguageModels.SPACY,
+)
 
 
 # ** pipeline configuration
@@ -61,7 +72,7 @@ def build_base_target_feature_pipe() -> Pipeline:
     pipe_target_feat.add(
         entry_wise_cleansing,
         {
-            'target_feature': ('VorgangsBeschreibung',),
+            'target_features': ('VorgangsBeschreibung',),
             'cleansing_func': clean_string_slim,
         },
         save_result=True,
@@ -106,7 +117,6 @@ def build_base_target_feature_pipe() -> Pipeline:
 # ** Merge duplicates
 def build_merge_duplicates_pipe() -> Pipeline:
     pipe_merge = Pipeline(name='Merge_Duplicates', working_dir=SAVE_PATH_FOLDER)
-    # pipe_merge.add(merge_similarity_dupl, save_result=True)
     pipe_merge.add(
         numeric_pre_filter_feature,
         {
@@ -134,7 +144,7 @@ def build_tk_graph_pipe() -> Pipeline:
     pipe_token_analysis.add(
         build_token_graph,
         {
-            'model': SPCY_MODEL,
+            'model': SPACY_MODEL,
             'target_feature': 'entry',
             'weights_feature': 'num_occur',
             'batch_idx_feature': 'batched_idxs',

src/lang_main/render/cytoscape.py

@@ -14,6 +14,7 @@ from lang_main.constants import (
     CYTO_ITER_NEIGHBOUR_DEPTH,
     CYTO_LAYOUT_NAME,
     CYTO_LAYOUT_PROPERTIES,
+    CYTO_NETWORK_ZOOM_FACTOR,
     CYTO_NUMBER_SUBGRAPHS,
     CYTO_PATH_STYLESHEET,
     CYTO_SANDBOX_NAME,
@@ -125,6 +126,17 @@ def reset_current_network_to_base() -> None:
     p4c.set_current_network(CYTO_BASE_NETWORK_NAME)
 
 
+def fit_content(
+    zoom_factor: float = CYTO_NETWORK_ZOOM_FACTOR,
+    network_name: str = CYTO_BASE_NETWORK_NAME,
+) -> None:
+    p4c.hide_all_panels()
+    p4c.fit_content(selected_only=False, network=network_name)
+    zoom_current = p4c.get_network_zoom(network=network_name)
+    zoom_new = zoom_current * zoom_factor
+    p4c.set_network_zoom_bypass(zoom_new, bypass=False, network=network_name)
+
+
 def export_network_to_image(
     filename: str,
     target_folder: Path = SAVE_PATH_FOLDER,
@@ -156,9 +168,10 @@ def export_network_to_image(
     if filetype == 'SVG':
         text_as_font = False
 
+    # close non-necessary windows and fit graph in frame before image display
+    fit_content(network_name=network_name)
     # image is generated in sandbox directory and transferred to target destination
     # (preparation for remote instances of Cytoscape)
-    # TODO close non-necessary windows before image display
     p4c.export_image(
         filename=filename,
         type=filetype,
@@ -168,7 +181,6 @@ def export_network_to_image(
         export_text_as_font=text_as_font,
         page_size=pdf_export_page_size,
     )
-    # TODO change back to Cytoscape 3.10 and above
     # TODO remove if Cytoscape >= 3.10.* is running in container
     # p4c.export_image(
     #     filename=filename,
@@ -211,7 +223,7 @@ def layout_network(
     logger.debug('Applying layout to network...')
     p4c.set_layout_properties(layout_name, layout_properties)
     p4c.layout_network(layout_name=layout_name, network=network_name)
-    p4c.fit_content(selected_only=False, network=network_name)
+    fit_content(network_name=network_name)
     logger.debug('Layout application to network successful.')
 
 
@@ -245,7 +257,7 @@ def apply_style_to_network(
     """
     logger.debug('Applying style to network...')
     styles_avail = cast(list[str], p4c.get_visual_style_names())
-    if CYTO_STYLESHEET_NAME not in styles_avail:
+    if style_name not in styles_avail:
         if not pth_to_stylesheet.exists():
             # existence for standard path verified at import, but not for other
             # provided paths
@@ -278,7 +290,7 @@ def apply_style_to_network(
         node_size_property,
         number_scheme=scheme,
         mapping_type='c',
-        style_name='lang_main',
+        style_name=style_name,
         default_number=min_node_size,
     )
     p4c.set_node_size_mapping(**node_size_map)
@@ -289,7 +301,7 @@ def apply_style_to_network(
     #     p4c.set_node_size_bypass(nodes_SUID, new_sizes=min_node_size, network=network_name)
     # p4c.set_visual_style(style_name, network=network_name)
     # time.sleep(1)  # if not waited image export could be without applied style
-    p4c.fit_content(selected_only=False, network=network_name)
+    fit_content(network_name=network_name)
     logger.debug('Style application to network successful.')
 
 
@@ -384,7 +396,7 @@ def make_subnetwork(
         network=network_name,
     )
     p4c.set_current_network(subnetwork_name)
-    p4c.fit_content(selected_only=False, network=subnetwork_name)
+
     if export_image:
         time.sleep(1)
         export_network_to_image(

src/lang_main/types.py

@@ -1,5 +1,5 @@
 import enum
-from collections.abc import Hashable
+from collections.abc import Callable, Hashable
 from typing import (
     Any,
     Literal,
@@ -10,9 +10,20 @@ from typing import (
 
 import numpy as np
 from pandas import DataFrame
+from sentence_transformers import SentenceTransformer
+from spacy.language import Language as SpacyModel
 from spacy.tokens.doc import Doc as SpacyDoc
+from spacy.tokens.token import Token as SpacyToken
 from torch import Tensor
 
+__all__ = [
+    'SentenceTransformer',
+    'SpacyModel',
+    'SpacyDoc',
+    'SpacyToken',
+    'Tensor',
+]
+
 
 # ** logging
 class LoggingLevels(enum.IntEnum):
@@ -23,6 +34,24 @@ class LoggingLevels(enum.IntEnum):
     CRITICAL = 50
 
 
+# ** models
+class LanguageModels(enum.StrEnum):
+    SENTENCE_TRANSFORMER = enum.auto()
+    SPACY = enum.auto()
+
+
+Model: TypeAlias = SentenceTransformer | SpacyModel
+ModelLoaderFunc: TypeAlias = Callable[..., Model]
+
+
+class ModelLoaderInfo(TypedDict):
+    func: ModelLoaderFunc
+    kwargs: dict[str, Any]
+
+
+ModelLoaderMap: TypeAlias = dict[LanguageModels, ModelLoaderInfo]
+
+
 # ** devices
 class STFRDeviceTypes(enum.StrEnum):
     CPU = enum.auto()