import networkx as nx import pytest from lang_main.analysis import graphs TK_GRAPH_NAME = 'TEST_TOKEN_GRAPH' def build_init_graph(token_graph: bool): edge_weights = [ {'weight': 1}, {'weight': 2}, {'weight': 3}, {'weight': 4}, {'weight': 5}, {'weight': 6}, ] edges = [ (1, 2), (1, 3), (2, 4), (3, 4), (1, 4), (2, 1), ] edges_to_add = [] for i, edge in enumerate(edges): edge = list(edge) edge.append(edge_weights[i]) # type: ignore edges_to_add.append(tuple(edge)) if token_graph: G = graphs.TokenGraph(name=TK_GRAPH_NAME, enable_logging=False) else: G = nx.DiGraph() G.add_edges_from(edges_to_add) return G @pytest.fixture(scope='module') def graph(): return build_init_graph(token_graph=False) @pytest.fixture(scope='module') def tk_graph(): return build_init_graph(token_graph=True) def test_graph_size(graph): assert len(graph.nodes) == 4 assert len(graph.edges) == 6 def test_save_to_GraphML(graph, tmp_path): filename = 'test_graphML' graphs.save_to_GraphML(graph, saving_path=tmp_path, filename=filename) saved_file = (tmp_path / filename).with_suffix('.graphml') assert saved_file.exists() def test_metadata_retrieval(graph): metadata = graphs.get_graph_metadata(graph) assert metadata['num_nodes'] == 4 assert metadata['num_edges'] == 6 assert metadata['min_edge_weight'] == 1 assert metadata['max_edge_weight'] == 6 assert metadata['node_memory'] == 112 assert metadata['edge_memory'] == 336 assert metadata['total_memory'] == 448 def test_graph_update_batch(): graph_obj = build_init_graph(token_graph=False) graphs.update_graph(graph_obj, batch=((4, 5), (5, 6)), weight_connection=8) metadata = graphs.get_graph_metadata(graph_obj) assert metadata['num_nodes'] == 6 assert metadata['num_edges'] == 8 assert metadata['min_edge_weight'] == 1 assert metadata['max_edge_weight'] == 8 def test_graph_update_single_new(): graph_obj = build_init_graph(token_graph=False) graphs.update_graph(graph_obj, parent=4, child=5, weight_connection=7) metadata = graphs.get_graph_metadata(graph_obj) assert metadata['num_nodes'] == 5 assert metadata['num_edges'] == 7 assert metadata['min_edge_weight'] == 1 assert metadata['max_edge_weight'] == 7 def test_graph_update_single_existing(): graph_obj = build_init_graph(token_graph=False) graphs.update_graph(graph_obj, parent=1, child=4, weight_connection=5) metadata = graphs.get_graph_metadata(graph_obj) assert metadata['num_nodes'] == 4 assert metadata['num_edges'] == 6 assert metadata['min_edge_weight'] == 1 assert metadata['max_edge_weight'] == 10 @pytest.mark.parametrize('cast_int', [True, False]) def test_graph_undirected_conversion(graph, cast_int): graph_undir = graphs.convert_graph_to_undirected(graph, cast_int=cast_int) # edges: (1, 2, w=1) und (2, 1, w=6) --> undirected: (1, 2, w=7) assert graph_undir[1][2]['weight'] == pytest.approx(7.0) def test_graph_cytoscape_conversion(graph): cyto_graph, weight_data = graphs.convert_graph_to_cytoscape(graph) node = cyto_graph[0] edge = cyto_graph[-1] assert node['data']['id'] == 1 # type: ignore assert edge['data']['source'] == 3 # type: ignore assert edge['data']['target'] == 4 # type: ignore assert edge['data']['weight'] == 4 # type: ignore assert weight_data['min'] == 1 assert weight_data['max'] == 6 def test_tk_graph_properties(tk_graph): assert tk_graph.name == TK_GRAPH_NAME assert isinstance(tk_graph.directed, graphs.TokenGraph) assert isinstance(tk_graph.undirected, nx.Graph) tk_graph.update_metadata() metadata_directed = tk_graph.metadata_directed assert metadata_directed['num_nodes'] == 4 assert metadata_directed['num_edges'] == 6 assert metadata_directed['min_edge_weight'] == 1 assert metadata_directed['max_edge_weight'] == 6 assert metadata_directed['node_memory'] == 112 assert metadata_directed['edge_memory'] == 336 assert metadata_directed['total_memory'] == 448 metadata_undirected = tk_graph.metadata_undirected assert metadata_undirected['num_nodes'] == 4 assert metadata_undirected['num_edges'] == 5 assert metadata_undirected['min_edge_weight'] == 2 assert metadata_undirected['max_edge_weight'] == 7 assert metadata_undirected['node_memory'] == 112 assert metadata_undirected['edge_memory'] == 280 assert metadata_undirected['total_memory'] == 392 def test_graph_degree_filter(tk_graph): filtered_graph = graphs.filter_graph_by_node_degree( tk_graph, bound_lower=3, bound_upper=3, ) assert len(filtered_graph.nodes) == 2 def test_graph_edge_number_filter(tk_graph): number_edges_limit = 1 filtered_graph = graphs.filter_graph_by_number_edges( tk_graph, limit=number_edges_limit, ) assert len(filtered_graph.edges) == number_edges_limit filtered_graph = graphs.filter_graph_by_node_degree( filtered_graph, bound_lower=1, bound_upper=None, ) assert len(filtered_graph.nodes) == 2, 'one edge should result in only two nodes'