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<header>
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<h1 class="title">Module <code>lang_main.render.cytoscape_monkeypatch</code></h1>
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</header>
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<section id="section-intro">
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</section>
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<section>
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</section>
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<section>
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</section>
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<section>
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<h2 class="section-title" id="header-functions">Functions</h2>
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<dl>
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<dt id="lang_main.render.cytoscape_monkeypatch.select_edges_connecting_selected_nodes"><code class="name flex">
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<span>def <span class="ident">select_edges_connecting_selected_nodes</span></span>(<span>network=None, base_url='http://127.0.0.1:1234/v1')</span>
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</code></dt>
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<dd>
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<details class="source">
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<summary>
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<span>Expand source code</span>
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</summary>
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<pre><code class="python">@cy_log # pragma: no cover
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def select_edges_connecting_selected_nodes(network=None, base_url=DEFAULT_BASE_URL): # noqa: F405 # pragma: no cover
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"""Select edges in a Cytoscape Network connecting the selected nodes, including self loops connecting single nodes.
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Any edges selected beforehand are deselected before any new edges are selected
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Args:
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network (SUID or str or None): Name or SUID of a network. Default is the
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"current" network active in Cytoscape.
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base_url (str): Ignore unless you need to specify a custom domain,
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port or version to connect to the CyREST API. Default is http://127.0.0.1:1234
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and the latest version of the CyREST API supported by this version of py4cytoscape.
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Returns:
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dict: {'nodes': [node list], 'edges': [edge list]} or None if no selected nodes
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Raises:
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CyError: if network name or SUID doesn't exist
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requests.exceptions.RequestException: if can't connect to Cytoscape or Cytoscape returns an error
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Examples:
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>>> select_edges_connecting_selected_nodes()
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None
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>>> select_edges_connecting_selected_nodes(network='My Network')
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{'nodes': [103990, 103991, ...], 'edges': [104432, 104431, ...]}
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>>> select_edges_connecting_selected_nodes(network=52)
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{'nodes': [103990, 103991, ...], 'edges': [104432, 104431, ...]}
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Note:
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In the return value node list is list of all selected nodes, and
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edge list is the SUIDs of selected edges -- dict is None if no nodes were selected or there were no newly
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created edges
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"""
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net_suid = networks.get_network_suid(network, base_url=base_url)
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selected_nodes = get_selected_nodes(network=net_suid, base_url=base_url)
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# TODO: In R version, NA test is after len() test ... shouldn't it be before?
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if not selected_nodes:
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return None
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all_edges = networks.get_all_edges(net_suid, base_url=base_url)
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selected_sources = set()
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selected_targets = set()
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for n in selected_nodes:
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n = re_parenthesis_1.sub('\(', n) # type: ignore
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n = re_parenthesis_2.sub('\)', n) # type: ignore
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selected_sources |= set(filter(re.compile('^' + n).search, all_edges)) # type: ignore
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selected_targets |= set(filter(re.compile(n + '$').search, all_edges)) # type: ignore
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selected_edges = list(selected_sources.intersection(selected_targets))
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if len(selected_edges) == 0:
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return None
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res = select_edges(
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selected_edges,
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by_col='name',
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preserve_current_selection=False,
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network=net_suid,
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base_url=base_url,
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)
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return res
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# TODO: isn't the pattern match a bit cheesy ... shouldn't it be ^+n+' (' and ') '+n+$ ???</code></pre>
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</details>
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<div class="desc"><p>Select edges in a Cytoscape Network connecting the selected nodes, including self loops connecting single nodes.</p>
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<p>Any edges selected beforehand are deselected before any new edges are selected</p>
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<h2 id="args">Args</h2>
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<dl>
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<dt><strong><code>network</code></strong> : <code>SUID</code> or <code>str</code> or <code>None</code></dt>
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<dd>Name or SUID of a network. Default is the
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"current" network active in Cytoscape.</dd>
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<dt><strong><code>base_url</code></strong> : <code>str</code></dt>
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<dd>Ignore unless you need to specify a custom domain,
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port or version to connect to the CyREST API. Default is <a href="http://127.0.0.1:1234">http://127.0.0.1:1234</a>
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and the latest version of the CyREST API supported by this version of py4cytoscape.</dd>
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</dl>
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<h2 id="returns">Returns</h2>
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<dl>
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<dt><code>dict</code></dt>
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<dd>{'nodes': [node list], 'edges': [edge list]} or None if no selected nodes</dd>
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</dl>
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<h2 id="raises">Raises</h2>
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<dl>
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<dt><code>CyError</code></dt>
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<dd>if network name or SUID doesn't exist</dd>
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<dt><code>requests.exceptions.RequestException</code></dt>
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<dd>if can't connect to Cytoscape or Cytoscape returns an error</dd>
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</dl>
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<h2 id="examples">Examples</h2>
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<pre><code class="language-python-repl">>>> select_edges_connecting_selected_nodes()
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None
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>>> select_edges_connecting_selected_nodes(network='My Network')
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{'nodes': [103990, 103991, ...], 'edges': [104432, 104431, ...]}
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>>> select_edges_connecting_selected_nodes(network=52)
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{'nodes': [103990, 103991, ...], 'edges': [104432, 104431, ...]}
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</code></pre>
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<h2 id="note">Note</h2>
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<p>In the return value node list is list of all selected nodes, and
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edge list is the SUIDs of selected edges – dict is None if no nodes were selected or there were no newly
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created edges</p></div>
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</dd>
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</dl>
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</section>
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<section>
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<ul id="index">
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<li><h3>Super-module</h3>
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<ul>
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<li><code><a title="lang_main.render" href="index.html">lang_main.render</a></code></li>
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</ul>
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</li>
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<li><h3><a href="#header-functions">Functions</a></h3>
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<ul class="">
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<li><code><a title="lang_main.render.cytoscape_monkeypatch.select_edges_connecting_selected_nodes" href="#lang_main.render.cytoscape_monkeypatch.select_edges_connecting_selected_nodes">select_edges_connecting_selected_nodes</a></code></li>
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