support for optional edge rescaling

lang_main_config.toml

@@ -1,8 +1,8 @@
 # d-opt -- lang_main: config file
 
 [paths]
-inputs = './lang-data/in/'
-results = './lang-data/out/'
+inputs = './lang-main/data/tests/in/'
+results = './lang-main/data/tests/out/'
 models = './lang-models'
 graph_export_filename = 'EXPORT-TokenGraph'
 
@@ -35,6 +35,7 @@ threshold_amount_characters = 5
 threshold_similarity = 0.92
 
 [graph_postprocessing]
+enable_edge_rescaling = false
 max_edge_number = -1
 
 [time_analysis.uniqueness]

pyproject.toml

@@ -1,11 +1,11 @@
 [project]
 name = "tom-plugin"
-version = "0.1.2dev1"
+version = "0.1.2"
 description = "Wrapper for TOM plugins with different helper CLIs, primarily integration testing"
 authors = [
     {name = "d-opt GmbH, resp. Florian Förster", email = "f.foerster@d-opt.com"},
 ]
-dependencies = ["lang-main[spacy-md,spacy-trf]>=0.1.1"]
+dependencies = ["lang-main[spacy-md,spacy-trf]>=0.1.2.dev3"]
 requires-python = ">=3.11"
 readme = "README.md"
 license = {text = "MIT"}
@@ -73,6 +73,7 @@ directory = "reports/coverage"
 
 
 
+
 [tool.pdm]
 distribution = true
 
@@ -94,10 +95,13 @@ dev = [
     "bump-my-version>=0.29.0",
     "jupyterlab>=4.3.4",
     "ipywidgets>=8.1.5",
+    "pytest>=8.4.1",
+    "coverage>=7.9.1",
+    "pytest-cov>=6.2.1",
 ]
 
 [tool.bumpversion]
-current_version = "0.1.2dev1"
+current_version = "0.1.2"
 parse = """(?x)
     (?P<major>0|[1-9]\\d*)\\.
     (?P<minor>0|[1-9]\\d*)\\.

src/tom_plugin/pipeline.py

@@ -12,6 +12,7 @@ from lang_main.analysis.graphs import (
 )
 from lang_main.constants import (
     CYTO_BASE_NETWORK_NAME,
+    ENABLE_EDGE_RESCALING,
     INPUT_PATH_FOLDER,
     SAVE_PATH_FOLDER,
     SKIP_GRAPH_POSTPROCESSING,
@@ -51,6 +52,7 @@ pipe_graph_postprocessing = build_tk_graph_post_pipe()
 pipe_graph_rescaling = build_tk_graph_rescaling_pipe(
     save_result=True,
     exit_point=EntryPoints.TK_GRAPH_ANALYSIS_RESCALED,
+    enable_rescaling=ENABLE_EDGE_RESCALING,
 )
 pipe_timeline = build_timeline_pipe()
 

tests/test_pipeline.py

@@ -0,0 +1,7 @@
+from tom_plugin import pipeline
+
+
+def test_pipeline():
+    test_id = 'test1'
+    filename = 'Dummy_Dataset_N_1000.csv'
+    pipeline.run_on_csv_data(id=test_id, filename=filename)